Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1561 ATGGCGACGACAACCGCGGATCCGACGCCGTTAATCGGAACTTCATCCGATGAGTCAAACTCCGGACGGAGAATTCTCCGTGCGCCGAGTCTCCGTCAAGCGGCGCGGTTCCTACGACAAGCGAGTGGGCGGAGGTTGATGCGCGAGCCGTCGATGATGGTGAGGGAAACAGCTGCGGAGCAATTGGAAGAGAGACAGAGCGATTGGGCTTATTCGAAGCCGGTGGTGATCCTTGACATTCTCTGGAACTTGTCGTTCATTATTGTGGCCGCTACTGTGTTGATTTTGAGTCGGAATGAATCTCCCACTACGCCTCTTAGGCTGTGGATTTTAGGGTATGCGCTACAGTGTGTTCTTCATACTCTGTGTGTTTGTTTTGAGTATCGGAGAAGGATTAGGATGCGGGAACAGTCCAACAGTAGCGGTGGTACCGCGGTCGGGAGTGGTGGCAGTGGGGATTCGAGCTTTGGACAGTATGTGAATGCGGCGCAGTACGGGGATGATGGTTCTACCAGTAGTTTGCCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCGGATGGTCAAGATTTGATCAATGAATCTCCTATGCTTTACTGGTTATGTATTGTCTTCTTGGGGTTTGATGTTTTTTTTGTCGTTTTCTGTATTGCACTGGCATGCATCATTGGTCTTGCTGTTTGCTGCTGTCTTCCGTGTATTATTGCGCTTCTGTATGCCGTTGCAGACCAGGAAGGGGCAACAAAAGAAGACATTGAACAGTTGTCAAAATTCAAATTCCAAAGAAAAGGTAATGAGAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGACTGAATGTCGAGCTGATTCCCCAATTGAACACGTGCTTGCTGATGAGGATGCGGAATGTTGCATCTGTCTTTCTGCCTATGAAGATGGTGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTGGCTGTGTGGACAAATGGCTGCACATTAATGCGACGTGCCCCCTCTGCAAGTATGACATTTTGAAAAGTAGCAGCTATCAAGAGCAAGTGTAG 1104 0.4764 MATTTADPTPLIGTSSDESNSGRRILRAPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNLSFIIVAATVLILSRNESPTTPLRLWILGYALQCVLHTLCVCFEYRRRIRMREQSNSSGGTAVGSGGSGDSSFGQYVNAAQYGDDGSTSSLPKHLESANTMFSFIWWVIGFYWVSADGQDLINESPMLYWLCIVFLGFDVFFVVFCIALACIIGLAVCCCLPCIIALLYAVADQEGATKEDIEQLSKFKFQRKGNEKLAGNTQGPVGGIMTECRADSPIEHVLADEDAECCICLSAYEDGVELRQLPCGHHFHCGCVDKWLHINATCPLCKYDILKSSSYQEQV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1561 367 Pfam Ring finger domain 312 354 IPR001841 -
Psa4g1561 367 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Psa4g1561 367 PANTHER TARGET OF ERK KINASE MPK-1 4 364 - -
Psa4g1561 367 CDD RING-H2_RNF111_like 312 356 - -
Psa4g1561 367 SUPERFAMILY RING/U-box 303 360 - -
Psa4g1561 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 364 - -
Psa4g1561 367 MobiDBLite consensus disorder prediction 1 23 - -
Psa4g1561 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 366 IPR013083 -
Psa4g1561 367 SMART ring_2 313 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1561 Psa-Chr4 109054608 109059108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1561 9 364 C3H Transcription Factor Family AT1G68070 47.383 4.19e-113 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1561 - - gmx:100779757 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1561 4 109054608 109059108 Psa4g1561 4 109054608 109059108 ECH