Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1553 ATGGTGAGGGGAAAAACTCAAATGAAGAGAATCGAAAGTGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAACGGGTTGCTTAAAAAGGCTTTTGAACTCTCAGTGCTTTGTGATGCTGAAGTAGCACTCATTGTCTTCTCTGCCACAGGGAAACTCCATGAGTTCTCCAGTTCAAGTGTAAACAAAACAGTGGAACGCTATCAACGGAGAGTCAAGGACTTGGCTCTCAGCACCAAAGAAATCCAAGAAAATACACAGATCCTAATGGAATGTGATATCAACACAACAAAGAAGTTGGAGCAACTAGAACTTTACAAAAGGAAGCTGCTGGGATATGAATTGGATACATGTGGTATTGAAGAATTACAACGGATTGAAAATCAACTTGAATACAGCTTAGGCAAAGTTAGGGCAAGAAAGGATCAACTGTTGAGGGAACAAATTGAAAAGCTAAAGAAACAGGAAAGGTGCCTACTTGAAGAAAATAGACGCTTACGTGAACAATGTGGAATTATACAACAAGATATAGAACTCTTAACAGAAGGTGAGCTCGGTGAGGAGGTGGAGACGGAATTGTTCATAGGGCGACCTCATAAACAAATGATTTGA 615 0.3984 MVRGKTQMKRIESESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSATGKLHEFSSSSVNKTVERYQRRVKDLALSTKEIQENTQILMECDINTTKKLEQLELYKRKLLGYELDTCGIEELQRIENQLEYSLGKVRARKDQLLREQIEKLKKQERCLLEENRRLREQCGIIQQDIELLTEGELGEEVETELFIGRPHKQMI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1553 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1553 204 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Psa4g1553 204 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Psa4g1553 204 PANTHER MADS-BOX PROTEIN SOC1 1 200 - -
Psa4g1553 204 Coils Coil 143 170 - -
Psa4g1553 204 Pfam K-box region 96 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1553 204 Coils Coil 66 86 - -
Psa4g1553 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Psa4g1553 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g1553 204 PANTHER MADS BOX PROTEIN 1 200 - -
Psa4g1553 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1553 Psa-Chr4 108771450 108781797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1553 1 199 MADS-box Gene Family AT4G22950 57.212 1.17e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g1553 K-box 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1553 - - mtr:MTR_4g102530 285.034