Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1546 ATGAACTCTCGAGAACTTTCTCTAGTGGCCACGGCAACTCTAGTTGGCGCTTTCGCCTCCGCAATCGCTCTCCGTTTCTTCCACCGCTCCCAAACTCACCCATCCACATCCAAAACCAAGCCCTCGCGAAACGGCACCGTCTCTTCTTCTACAGACCCTTTTGACCCCTCCAAACGCAAAGAATACTTGTCGTGGGATGATTATTTTATGGCAATTGCGTTTTTGTCTGCGGAAAGATCCAAAGACCCTAACAGGCAGGTTGGTGCATGCTTAGTGAGTCAAGATGGTATAATTCTAGGGATTGGTTATAATGGATTTCCAAGAGGTTGTTCTGATGACAAGTTACCATGGGCCAAGAAATCTAAGACCGGGAATCCTTTGGACACTAAGTACCCTTATGTTTGTCATGCTGAAGTAAATGCTATTCTTAACACAAATCATGCCTCTGCTGCTGGACAACGGCTGTATGTGACCATGTTTCCTTGCAATGAGTGTGCCAAGATCATAATCCAGTCAGGAGTTTCTGAAATTATTTATTTTGTGGAGAAGAGATTAGAAAATTCAAATGTTATATATACTGCCTCTCACAAGCTACTTTCATTGGCTGGTGTGAAGGTGAGGAAACACCAACCAGCGATGAGTGAGATTCATCTGAACTACGCAGCCGCTTTAGCCGACTTAGCAAATTCAAACAACACCCTCGACGCAATAACCGCCGACTTCGACAAAATCGAACAACTTTTCTCTGACCCCAAGGTGTTCGACTATTTCTCCAGCCCAATAGTCGAAGATTCCACCAAACGCCAACTTATAGGAGAGTTCGCCACTACCTCAGGCTTCCAACCACACACACACAACTTCCTTAACGTCTTGATCGACTCGAAGAGGATCGACATGATCATCGACATTATTAAGGAGTTTGAATTTGTTTACAATACTTTAACTGATACAGAGCTTGTGGTTGTGACTTCGGTTGTGAAGTTGGAGTCACATCATTTGGCTCAGATTGCAAAACAGGTTCAGAAGCTTACTGGGGCTAAGAAAGTGAGGACTAAAACACTTCTTGATCCAAGTTTGGTGGCTGGTTTTACTGTCAGGTATGGGAATACTGGCTCTAAGTTTATTGATATGAGTGTTAAGAGGAAACTCGAGGAAATTGCTGCTCAAATTGATTTGGGTGATATCCAACTTGCTGTATAA 1200 0.4367 MNSRELSLVATATLVGAFASAIALRFFHRSQTHPSTSKTKPSRNGTVSSSTDPFDPSKRKEYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKTGNPLDTKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEIIYFVEKRLENSNVIYTASHKLLSLAGVKVRKHQPAMSEIHLNYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIAAQIDLGDIQLAV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1546 399 PRINTS ATP synthase delta subunit signature 216 235 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PRINTS ATP synthase delta subunit signature 285 296 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PRINTS ATP synthase delta subunit signature 296 310 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PRINTS ATP synthase delta subunit signature 347 362 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PRINTS ATP synthase delta subunit signature 365 383 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 1 221 - -
Psa4g1546 399 SUPERFAMILY Cytidine deaminase-like 66 220 IPR016193 GO:0003824
Psa4g1546 399 Pfam ATP synthase delta (OSCP) subunit 218 389 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 64 180 IPR002125 -
Psa4g1546 399 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 136 169 IPR016192 GO:0008270|GO:0016787
Psa4g1546 399 Gene3D Cytidine Deaminase, domain 2 59 209 - -
Psa4g1546 399 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 216 315 IPR026015 -
Psa4g1546 399 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 349 368 IPR020781 GO:0015986|GO:0016020|GO:0046933
Psa4g1546 399 MobiDBLite consensus disorder prediction 33 53 - -
Psa4g1546 399 CDD deoxycytidylate_deaminase 66 179 IPR035105 -
Psa4g1546 399 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 219 389 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 Hamap ATP synthase subunit delta [atpD]. 212 392 IPR000711 GO:0015986|GO:0046933
Psa4g1546 399 PANTHER DEOXYCYTIDYLATE DEAMINASE-RELATED 1 221 IPR015517 -
Psa4g1546 399 Gene3D - 216 308 IPR026015 -
Psa4g1546 399 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 64 206 IPR002125 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1546 219 398 Primary Pumps ATPases AT4G09650 59.444 5.71e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1546 K01493 - gmx:100792003 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1546 4 107904165 107912678 Psa4g1546 4 107904165 107912678 ECH