Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1538 ATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGTCCAACACAGATTAGGGATGGGTTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTGGATATCTTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTAGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAAGGAAAGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATTCTGACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATTACTGTTGAAGAAGTGAAGAAAAAGATTGCTGATTTACTTAGAGAATATGCGGATAGCGGTGAGACAGTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTTGCGTTCTTCCATCACGAAGTTGTGAAGAAGGCTCTGGTACTTGCAATGGAGATTCCTTCGTCAGAACCTCTACTGCTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTAGATTGGCAGAAGGTCTAGATGATCTCGCTCTTGATATTCCATCAGCTAAAGCCCTGTTTCAGTCGTTTGTCCCCAAGGCAATCTCTGAAGGATGGCTTGATGCCTCCTTTACCAATCCAGTTGGTGAAAATGGGGAATTCCAAGTTGAAGATGAGAAGGTGAGGAAGTATAAAAAGGAAGCTGTGACTATAATTCATGAGTACTTTCTCTCCGATGACATTCCTGAACTTATTCGTAGTCTAGAAGATCTTGGAGTACCTGAGTATAACTCAATATTTTTGAAGAGGTTAATAACACTTGCTTTGGACCGAAAGAACAGAGAAAAGGAGATGGCATCTGTCCTACTATCTGCACTTCATATAGAGATATTTTCAACAGATGATATAGTTAATGGTTTTGTTATGCTTCTGGAAAATGCAGAAGATACAACACTGGATATACTGGATGCTTCCAATGAGCTTGCACTTTTTTTAGCCCGGGCTGTGATTGATGATGTTCTTGCCCCATTGAATTTGGATGAAATTAGCAGCAGGCTACTACCAAAAAGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTTGTTTCTGCTCGCCATGCAGGTGAAAGGCTATTGAGATGCTGGGGCGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTACGAAAGTGGCGGGGTTGTCAGTGAAGCATGCCAATGTATCCGTGACTTGGGAATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCCTTGGTTATGGCCATGGAGAAGAAGAATGACAGGTTGCTAGATCTGCTGCAGGAATGCTTTAGTGAAGGCCTTATCACCACCAATCAGATGACTAAAGGGTTCACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTCGACATTCCAAATGCCAAGGAAAAATTTGCTTTCTATGTGGAGCATGCCCAGACCAAGGGCTGGCTTCTACCATCATTTGATCCCTCTGCCACAGATGTCTAA 1617 0.4416 MAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGVQVILTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYADSGETVEACRCIRELGVAFFHHEVVKKALVLAMEIPSSEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFTNPVGENGEFQVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGVPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTDDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEISSRLLPKSSGSETVRMARTLVSARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRLLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFAFYVEHAQTKGWLLPSFDPSATDV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1538 538 Gene3D - 108 241 - -
Psa4g1538 538 Gene3D - 406 534 - -
Psa4g1538 538 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Psa4g1538 538 ProSiteProfiles MI domain profile. 418 537 IPR003891 -
Psa4g1538 538 SUPERFAMILY ARM repeat 415 531 IPR016024 -
Psa4g1538 538 PANTHER PROGRAMMED CELL DEATH 4 1 533 IPR039778 GO:0045892
Psa4g1538 538 SMART ma3_7 256 367 IPR003891 -
Psa4g1538 538 SMART ma3_7 1 69 IPR003891 -
Psa4g1538 538 SMART ma3_7 122 233 IPR003891 -
Psa4g1538 538 SMART ma3_7 419 528 IPR003891 -
Psa4g1538 538 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 533 - -
Psa4g1538 538 SUPERFAMILY ARM repeat 253 411 IPR016024 -
Psa4g1538 538 ProSiteProfiles MI domain profile. 255 376 IPR003891 -
Psa4g1538 538 SUPERFAMILY ARM repeat 1 115 IPR016024 -
Psa4g1538 538 Coils Coil 119 139 - -
Psa4g1538 538 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Psa4g1538 538 Gene3D - 245 399 - -
Psa4g1538 538 Gene3D - 1 98 - -
Psa4g1538 538 SUPERFAMILY ARM repeat 118 240 IPR016024 -
Psa4g1538 538 Pfam MA3 domain 1 69 IPR003891 -
Psa4g1538 538 Pfam MA3 domain 420 527 IPR003891 -
Psa4g1538 538 Pfam MA3 domain 122 233 IPR003891 -
Psa4g1538 538 Pfam MA3 domain 257 366 IPR003891 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1538 422 518 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 2.46e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1538 - - gmx:100809081 927.546