Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1520 ATGGCGACTTCAGAAGAGGTTTTCCCATGGCTAAAATCTCTTCCGGTAGCACCTGAGTATCGACCATCTTTAGCAGAGTTTCAAGATCCAATAGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATATGGAATCTGCAAGATCATTCCACCCGTTTCACCTTCTTCTAAGAAAACCGTAATTGCTAACATCAACCGGTCTCAACCCCGCTTCACAACCCGTCAACAGCAGATCGGATTCTGTCCGCGGCGCCCTCAGCCGGTTCGACGACCGGTCTGGCACAGCGGTCATCACTACTCATTCCGCGAATTCGAAGCTAAGGCGAAGTCGTTTGAGAAAACTTACTTCGGAAAAGGGAAGAAGCTCGCTCAGTTTTCTCCTCTGGAAGTTGAAGCTATGTACTGGAAAGCTACTGCGGATAAGCCTTTTTCCGTTGAGTATGCCAACGACATGCCTGGTTCTGCGTTTGGGGAAGTGAACGACGCTGGTTTTGGAGGAGATGGTTTTTTAACGGTGGGTGAAACTGCTTGGAATATGAGAGGGGTTTCCAGGGCGAATGGGTCTCTGTTGAAGTTTATGAAAGAAGAGATTCCTGGTGTTACTTCTCCTATGGTTTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTCGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGAGGCTGCTGTTGCTTTTGAGGATGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGGGAGAAAACTACAGTGATGTCCCCTGAAGTATTCGTTCAGGCAGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTCAATCATGGTTTTAACTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGACGGTTGCTAAAGATGCTGCTATTAGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCTATGTGTTCTAGAATCCCTGAAGACATCAGTGTCGGACCAAGGAGTTCTCGACTTAAAGATAAGAAGAAGGGTGTAGGACAAACCGTAATTAAAGAACTATTTGCACAGGATGTGTTACAGAATAATGATCTGCTGCATGCACTCGGCAAAGGATCTTCTGTAGTACTCCTTCCTCGTAGCTCTTCTGACTTCTCTGTTTACTCAAAATTACGTGTTGGATCTCAACAACTTAAGGTTAACACTGATATTTCACCCAGTGCGTGCAATTCCGAGGGAACGAATTCCTCAAAAAAAATCATTTCAGACGATCTAGTGTTCAACAGGAATCATGGAATCAAAAAAGTAAAAGGTTTTTCTTCTGTAAAAGAAAAGTTCGCCACCTTGTGTGAAAGGAACAGGGTTTGTTCATTCAGTGCAAATGGTGACGTATGCACTTCAAGTTCAAAAGCATTGCAAAGAGACACTGAAAAAGATACGAGCCAAGGAGATGGGTTATCAGACCAAAGATTATTCTCATGTGTTACATGTGGAATATTAAGTTTTTCCTGTGTTGCAATTGTACAGCCTAAAGAACCAGCGGCTAGATACCTAATGTCAGCTGATTGTAGCTTCTTTAATGATGGGATAATTGATTCTGGAGTAACTAGAAATAAGTTTACTGCTGCGCATGAAGATGTAAACATTCCCGAGACTAGATACCTAATGTCAGCTGATTGTAGCTTCTTTAATGATGGGATAATTGATTCTGGAGTAACTAGAAATAAGTTTACTGCTGCGCATGAAGATGTAAACATTCCCGAGCAGAGCACATATACAGGATGGACAAAACAGAATGCCGGAAATGATTTATATGATGTTCCTGTTGAATCTTCTGAACAACAGACACAAATTGCTGATCAAAGAACACAAATTGCTGATCAAAGTTATATGGAAGCTTCAAATACTGAAAAAGGAAACACGGCTCTTGCATTGTTGGCTATAGCATATGGAAATTCATCCGATTCCGAGGAAGATGATCAAAGTGACTCAGATATAGCAGTTGATGGGGATGATTTGAACACGATGAACCATCCATTAGAAAGCAAATCCCAGGAGAGTCCTTGTTTGCCTTCTCAATTTCAAGATTGCCATGCTAGCCCTGTAAATAGTATTAACAATTATGAGAGTTATATGCATAAGAAAGTTGAGCGCATTATGAGTCCTTTTGATTACTCTATTAAGTCAGGAGATTATGATACCACATCAGGGGTATCATTCAAAAATACTAGGGAAGGACTTCATTCCACCTTGAATTTTTCCAAAGACACTCAAACTGAAATGCCCTTGTTGGGCAAGACTGTGATTCCCATTGATAATAAAAATGTCTCATCAGTGCCCCCATCTGATGAAGATTCTTCTAGGATGCATATCTTCTGTCTAGAGCATGCTGCAGAAGTAGAGCAGCAACTTCGTCCAATTGGAGGAGCGCATATATTACTCCTATGTCATCCAGATTATCTGAAGATAGAGGCTGAAGCGAAGTTTGTGGCAGAAGAAACGGGGATTAGTTATAAGTGGAAGAATACCATATACAGGCATGCCAACAGGGAAGACGAGGAGAGGATTCAATCAGCTCTGGATAGTGAGGAAGCTATTTCTGGCAATAGTGACTGGGCTGTAAAGTTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGGTCTCCACTTTACAGTAAGCAGATGCCTTACAATTCTGTTCTGTATTATGCATTTGGCTGTAGCTCTCCGGTAAGCTCGCCCATTGAGCCCAGTGTCTGTCAGAAAAGGACAAATAGGCAGAAAAAGGTAGTTGCTGGAAAGTGGTGCGGAAAAGTTTGGATGTCTAATCAGGTCCACCCGCTTTTAGCAAAAAGAGAGCTCGAAGATGTTGAGAATGAGAAAAGCATACAAATGTGGCCATTACTAGATGAGAAAAGTGAGAGATCAGGACGGACACACAAAAGTAATACTACGAATAGAAAATCTGGTAGGAAAAGGAAAATGGCCGTAGAGAGTGAAGGAGATTGGGAAGGAAGTTTTTCTGAGGGGGATTGGCATTCTGATAATCCAATTGAAGATAAATGCAATCAATCTCAAAGGAGGATTCTAGCAAGTAAGCGAACCAGGCATATTGAGGGACATGGTACTACTTCAGAAGGGGATTATTCTCCTTTGCAGCACCATAACATGCTTAAAAGCAAGCATACAAAATGCATGGGAAGTGACGCAGTTTCAGATGATTCGCTAGATGGTAATACTCGCATACAACCTTGGAGGAATGCTATTTCGAAGGAAGCTAAATCTATTGACAGTGATATGGTTTCAGATGATACAATGGACTATGATTCTGATTGGCCACAGAAGGAAGAGCTTAGTGACACGCAATATGCTATATCAGAAGATTCATTGGGTGTTGGTTCTCTTCAGCGGCATAGGAAGACTCCTAAAAGCAAGTATGACCAATACACTGTTGAAGATGTGATTTCTGATGACCAAACAGAGGTTTATATTCAGAAGCAAAAACGCGGGATATCTAAAAGCAGGCAACCCAAATATCTTCCGGAAGAAGATGCAGTGATATCAGACGATCAACTGGAGCACTGCATGCTGAAGCAACAGAAGAGGAGTCCTACAAGCTGGCAGGATAATTACCCTGTTGAAGAGGATATTATATCTGATGACGAACCTGAATGCCATTCTCGAAAGTATCAAAGAAGGATTCCGAAAGACAAACAAGTCAAACCCATCGTTGGGGAAGATGTAACATGTGATGACCAGTTGGAGTGTCACTTTCAGAAGCCCCGAAGAAGTATGCGAAGGAGCAAGAAAAATAAATATAGTGATGATGATAATATGGAAGACTCGGCTGAAAGTGATTCTCATGTGCTGCATAAAACTCCTAAAAGGAAGCAAGCTAAATTCACAAATGAAAACGATATAAACTCAGATGATCAGATGGACGATGATTGTCATCAGCAACACATGAGAACTCTTCGACGTAAGCAAACTAAATCACAAACTCTTCAACAAATGAAACAAGCTAACTCGCCTTGTGTGAGAAGCAAGCCATCTCGGCCTGTGAAACATGGTGCTCATTTGCTAACAAAATCAAAGGCTCCTCGGAAAATGAAGCAACAGCCTCTTGCATGGAATGACCAATCAGTTAACTCCAAAGATGAAACCTCGCAAATTGAAGACAATGAAGCTAGAAGACCTCCCAGCATGCGCATTAGGAAAAGAGTCCAAAAAATTCAGAACGAATCCGAGGAGAAAACAAAAGAAAAAGAAACAAATAAGAAAAAATTGAAGAATGCAATAGCTGCAAAGGTTTCAGCTGGCCGTGCCAAAGTGAAGGATGAGGAAGGAGAATACCAGTGTGACATTGAAGGGTGCACCATGAGTTTTTATTCTAAACAGGAGCTGATGCATCATAAGAAAAATATATGTCCTGTGAAAGGGTGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCATCACCGTCGAGTTCATGAGGATGATCGCCCACTAAAGTGTCCTTGGAAGGGATGCAAGATGGCTTTCAAGTGGGCTTGGGCTCGTACCGAACATATTCGAGTCCACACCGGTGCCCGTCCATATGTGTGTGCTGAGCCGGGGTGTGAACAAACATTCAGGTTTGTTTCTGATTTCAGTCGTCATAAGCGAAAAACTGGTCATTCAGTAAAGAAAACTCGTAAATAG 4827 0.4183 MATSEEVFPWLKSLPVAPEYRPSLAEFQDPIGYIFKIEKEASKYGICKIIPPVSPSSKKTVIANINRSQPRFTTRQQQIGFCPRRPQPVRRPVWHSGHHYSFREFEAKAKSFEKTYFGKGKKLAQFSPLEVEAMYWKATADKPFSVEYANDMPGSAFGEVNDAGFGGDGFLTVGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPREAAVAFEDVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVQAGVPCCRLVQNAGEFVVTFPRAYHTGFNHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLGLAMCSRIPEDISVGPRSSRLKDKKKGVGQTVIKELFAQDVLQNNDLLHALGKGSSVVLLPRSSSDFSVYSKLRVGSQQLKVNTDISPSACNSEGTNSSKKIISDDLVFNRNHGIKKVKGFSSVKEKFATLCERNRVCSFSANGDVCTSSSKALQRDTEKDTSQGDGLSDQRLFSCVTCGILSFSCVAIVQPKEPAARYLMSADCSFFNDGIIDSGVTRNKFTAAHEDVNIPETRYLMSADCSFFNDGIIDSGVTRNKFTAAHEDVNIPEQSTYTGWTKQNAGNDLYDVPVESSEQQTQIADQRTQIADQSYMEASNTEKGNTALALLAIAYGNSSDSEEDDQSDSDIAVDGDDLNTMNHPLESKSQESPCLPSQFQDCHASPVNSINNYESYMHKKVERIMSPFDYSIKSGDYDTTSGVSFKNTREGLHSTLNFSKDTQTEMPLLGKTVIPIDNKNVSSVPPSDEDSSRMHIFCLEHAAEVEQQLRPIGGAHILLLCHPDYLKIEAEAKFVAEETGISYKWKNTIYRHANREDEERIQSALDSEEAISGNSDWAVKLGINLFYSANLSRSPLYSKQMPYNSVLYYAFGCSSPVSSPIEPSVCQKRTNRQKKVVAGKWCGKVWMSNQVHPLLAKRELEDVENEKSIQMWPLLDEKSERSGRTHKSNTTNRKSGRKRKMAVESEGDWEGSFSEGDWHSDNPIEDKCNQSQRRILASKRTRHIEGHGTTSEGDYSPLQHHNMLKSKHTKCMGSDAVSDDSLDGNTRIQPWRNAISKEAKSIDSDMVSDDTMDYDSDWPQKEELSDTQYAISEDSLGVGSLQRHRKTPKSKYDQYTVEDVISDDQTEVYIQKQKRGISKSRQPKYLPEEDAVISDDQLEHCMLKQQKRSPTSWQDNYPVEEDIISDDEPECHSRKYQRRIPKDKQVKPIVGEDVTCDDQLECHFQKPRRSMRRSKKNKYSDDDNMEDSAESDSHVLHKTPKRKQAKFTNENDINSDDQMDDDCHQQHMRTLRRKQTKSQTLQQMKQANSPCVRSKPSRPVKHGAHLLTKSKAPRKMKQQPLAWNDQSVNSKDETSQIEDNEARRPPSMRIRKRVQKIQNESEEKTKEKETNKKKLKNAIAAKVSAGRAKVKDEEGEYQCDIEGCTMSFYSKQELMHHKKNICPVKGCGKKFFSHKYLVHHRRVHEDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEPGCEQTFRFVSDFSRHKRKTGHSVKKTRK* 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1520 1608 Gene3D Cupin 10 345 - -
Psa4g1520 1608 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1598 - -
Psa4g1520 1608 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Psa4g1520 1608 Coils Coil 1442 1473 - -
Psa4g1520 1608 Pfam JmjC domain, hydroxylase 205 323 IPR003347 -
Psa4g1520 1608 ProSiteProfiles Zinc finger C2H2 type domain profile. 1575 1606 IPR013087 -
Psa4g1520 1608 ProSiteProfiles Zinc finger C2H2 type domain profile. 1545 1574 IPR013087 -
Psa4g1520 1608 ProSitePatterns Zinc finger C2H2 type domain signature. 1547 1569 IPR013087 -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1074 1093 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1370 1388 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1262 1278 - -
Psa4g1520 1608 SMART JmjN_1 16 57 IPR003349 -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1310 1345 - -
Psa4g1520 1608 ProSitePatterns Zinc finger C2H2 type domain signature. 1517 1539 IPR013087 -
Psa4g1520 1608 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1598 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1393 1407 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1257 1278 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1427 1467 - -
Psa4g1520 1608 SUPERFAMILY beta-beta-alpha zinc fingers 1532 1573 IPR036236 -
Psa4g1520 1608 ProSiteProfiles Zinc finger C2H2 type domain profile. 1515 1544 IPR013087 -
Psa4g1520 1608 ProSiteProfiles JmjC domain profile. 175 341 IPR003347 -
Psa4g1520 1608 SUPERFAMILY beta-beta-alpha zinc fingers 1563 1597 IPR036236 -
Psa4g1520 1608 SMART cupin_9 172 341 IPR003347 -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1009 1060 - -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1292 1467 - -
Psa4g1520 1608 Gene3D Classic Zinc Finger 1513 1599 - -
Psa4g1520 1608 SMART c2h2final6 1492 1514 IPR013087 -
Psa4g1520 1608 SMART c2h2final6 1545 1569 IPR013087 -
Psa4g1520 1608 SMART c2h2final6 1515 1539 IPR013087 -
Psa4g1520 1608 SMART c2h2final6 1575 1601 IPR013087 -
Psa4g1520 1608 MobiDBLite consensus disorder prediction 1032 1060 - -
Psa4g1520 1608 ProSitePatterns Zinc finger C2H2 type domain signature. 1577 1601 IPR013087 -
Psa4g1520 1608 Pfam jmjN domain 18 51 IPR003349 -
Psa4g1520 1608 SUPERFAMILY Clavaminate synthase-like 190 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1520 Psa-Chr4 106093976 106102899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1520 1441 1608 C2H2 Transcription Factor Family AT3G48430 65.000 1.68e-66 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa4g1520 JmjC 5.8e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1520 - - gmx:100775813 1878.22