Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1513 ATGTCCCCTTCACTTAATTATACTACTACTACCTTCAAAAATGAGGTAGAATATCTTGATAATGATGAAAATCCATTAATGGGTTGTTATGCTTCTTTGTATCCCAATTTGCCTATTTTGGAAAACAGTGCTAGTTCATCATGGATTCTTCCTTTTCCTGATCATGAAACTGAAACCATTAGGGATCACAAGAAGGTGAAAAGACCAACCGTAACTATCCCTATTTGGTTTGCGAATTTCAGCAGCCATAGTAATAGTTTCTTCAACAGTATAAACAGAAGCAACAGTGTGAATAGCATTCCGAGGCTTCATTTTAGAGATCACATAAGGACTTATAAGCAAAGATATTTTGCTGCCGAAGCTGTTGAAGAAGCTGCAGAAGAGAGTTTCAACTACGGTAACTGTGAAGCTGAAGAAGATGGTTCATGTGCTGATGGAATGAGACTAGTTCAGCTTCTGATTGCATGTGCTGAAGCGGTAGCGTGTCGCGACAAATCGCACGCTTCGGTTTTGTTATCTGAACTTAAATCGAATGCTTTGGTGTTTGGATCGTCGTTCCAGAGAGTTGCTTCTTGTTTTGTTCAAGGGTTAATAGAGAGACTGACTCTGATTCAACCAATTGGTAACAATTGTGTTGGATTAGATGCAAAGTCAATGATGAACATAATGGATGCGGCTTCAGAAGAAATGGAAGAAGCATTCAAGTTGGTTTATGAGATATGTCCACATATTCAGTTTGGACATTTTGTGGCTAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACCTTGGCATGAGTCTAGGTCTACCACACGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCGAATCGATCTGGTAGCCAACGTGTTCTTCGTAGGCTTAGGATCACGGCGGTTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCGATTTACGCGAAAAACTTGGGGATTCATTTGGAGTTCTCAATTGTGGAGAAGAATTTGGAGAATCTGAAACCCGAAGACATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTGGTTAAAGAGAGCCGTGGCGCGTTGAATTCAGTTTTACAAATGATCCACGGTCTTTCGCCCAAAGTGTTGGTGATGGTTGAGCAAGATTCAGGTCACAATGGACCTTTTTTTCTTGGTAGGTTTATGGAATCATTGCACTACTATTCTGCTATTTTTGACTCATTGGATGCTATGCTACCAAAATATGATACCAAGAGAGCAAAAATGGAACAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGAATGGAGAGGCATGAGAAAGTTGATCAATGGAGGAGGAGAATGAGTAGGGCTGGATTTCAAGGTTCACCTATTAAGATGGTGGTTCAAGCTAAACAGTGGCTTTTGAAGAATAAGGTTTGTGATGGATATACTGTTGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCAAAGCCTATTGTTGCAGTTTCTTGCTGGAAATGTTGA 1581 0.4016 MSPSLNYTTTTFKNEVEYLDNDENPLMGCYASLYPNLPILENSASSSWILPFPDHETETIRDHKKVKRPTVTIPIWFANFSSHSNSFFNSINRSNSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEESFNYGNCEAEEDGSCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLIERLTLIQPIGNNCVGLDAKSMMNIMDAASEEMEEAFKLVYEICPHIQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGEELSIYAKNLGIHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMIHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGSPIKMVVQAKQWLLKNKVCDGYTVVEEKGCLVLGWKSKPIVAVSCWKC* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1513 526 Pfam GRAS domain family 149 525 IPR005202 -
Psa4g1513 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 525 IPR005202 -
Psa4g1513 526 PANTHER DELLA PROTEIN RGL1-LIKE 54 525 - -
Psa4g1513 526 ProSiteProfiles GRAS family profile. 140 525 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1513 Psa-Chr4 106002460 106005073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1513 146 525 GRAS Transcription Factor Family AT1G66350 36.979 6.43e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa4g1513 GRAS 1.9e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1513 - - gmx:100815959 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1513 4 106002460 106005073 Psa4g1513 4 106002460 106005073 ECH