Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1507 ATGGAACACTCTGAAATCGATTTTGCTGCTGCTGTTTCCAACTCCGAAGAACCCCGACGCGGTTCCGAGGATCATTCCCCACCGTCAGATCTCAATCAGACCGTTAACGTAGATGATGACGCACTTGCTGTGGAGCTTCATGATAAGTTGGATTTGAAGGTTGAAGATGAAGAAGGGGCTGCTGAAACTGAGGTGAAAGTTTCCGAGTTTAACGACGGTGAACGAGTTTGCGATGAGGAATCTGTTAAGAGTGCTGATGAAGATGTAGTATCTGTTAAGGGTGAAGAAAGGGTTGATGGAGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATAGTGTTGGTTATGGTTATGGCGATGATGGTTATGGCGGTGGCTATGATGCTGGTTATGGTGATGGAGGTGAAAAGAAGGGAGATAGCGGCGATGATTATGGTGGTGGTTATGGGGATGGATATGATGCTGTTTATGGTTATGGTCATGGAGTTGAAAAGAAAGAAGGTAACATCAGTGATGGAAATCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCGTTTTATATGAAGACTGGGAGTTGCAAGTTTGGAATAAACTGCAAGTTTAATCACCCCATTAGGAGGAAAAACCAGGCTGTAAGGGAGAAGGTGCGAGAAAGAGAAGAGCCTGCAGAGAACTCAGGACAGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAGTTCAACCATACAAGAGGGTATGCAGCACCAATTTCAGAACTTAACTTTCTCGGGTTACCTATTCGTCTGGGCGAGAGAGAGTGCCCCTATTACATGCGTACTGGCTCTTGTAAATTCGGAGCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTTGGAGGAAGTGATCCTCAATCAGGGTATGGTAATGGAGGAGGGTATGGTAATGGAGGAGGGTCTGTTCCATTACGAGGTGTATCCCAACAATCTGTTTCTTCATGGTCGTCTTCATCAAGAAAGTTAAATGAAACACCTTATGTGCCAATGATGATTACGCCTACTCAAGGACTTGCTCCTCAAAGTCCTGATTGGAATGGATATCAGGCTCCTGTCTACTTATCTGAGAGGATCATGCATCCATCTTCTACATATGTCGTGAACAACCCAACAGTTGAAACAAATGTGTATGTGCCTCACCAGAAGCAGATGCCATTTGAAGTGTATCCAGAAAGGCCCGGTGAACCTGAATGCAGCTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAGTCTAATTGTAAATTTCACCATCCAAAGAATAGGAATGCGAGATTGCCTCCTTGCAACCTCAGTGACAAGGGTTTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGATCACCCAGAAAGCGCACTTCCCTTGATGATGCCTGGACTGGGACAGCAATCCTACGCAAACCCAGCGAATGCTCAGATGGCTGGGATGGGTGTAAGTGCAGGTGACGTGACAATTCAGCAATCTGTGTAA 1614 0.4492 MEHSEIDFAAAVSNSEEPRRGSEDHSPPSDLNQTVNVDDDALAVELHDKLDLKVEDEEGAAETEVKVSEFNDGERVCDEESVKSADEDVVSVKGEERVDGDSKGWDTNSWNENVNEELGGGRDSVGYGYGDDGYGGGYDAGYGDGGEKKGDSGDDYGGGYGDGYDAVYGYGHGVEKKEGNISDGNHQFPLRPEAEDCSFYMKTGSCKFGINCKFNHPIRRKNQAVREKVREREEPAENSGQTECKYYQRSGGCKFGKACKFNHTRGYAAPISELNFLGLPIRLGERECPYYMRTGSCKFGANCRFNHPDPTTVGGSDPQSGYGNGGGYGNGGGSVPLRGVSQQSVSSWSSSSRKLNETPYVPMMITPTQGLAPQSPDWNGYQAPVYLSERIMHPSSTYVVNNPTVETNVYVPHQKQMPFEVYPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRNARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANPANAQMAGMGVSAGDVTIQQSV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1507 537 SUPERFAMILY CCCH zinc finger 472 501 IPR036855 GO:0046872
Psa4g1507 537 SUPERFAMILY CCCH zinc finger 242 265 IPR036855 GO:0046872
Psa4g1507 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 217 IPR000571 GO:0046872
Psa4g1507 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 241 263 IPR000571 GO:0046872
Psa4g1507 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 473 498 IPR000571 GO:0046872
Psa4g1507 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 308 IPR000571 GO:0046872
Psa4g1507 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 452 IPR000571 GO:0046872
Psa4g1507 537 SUPERFAMILY CCCH zinc finger 283 309 IPR036855 GO:0046872
Psa4g1507 537 ProSiteProfiles Zinc finger C3H1-type profile. 471 499 IPR000571 GO:0046872
Psa4g1507 537 Gene3D - 233 317 - -
Psa4g1507 537 Gene3D - 420 506 - -
Psa4g1507 537 Gene3D - 171 228 - -
Psa4g1507 537 ProSiteProfiles Zinc finger C3H1-type profile. 238 266 IPR000571 GO:0046872
Psa4g1507 537 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 4 537 - -
Psa4g1507 537 SUPERFAMILY CCCH zinc finger 192 219 IPR036855 GO:0046872
Psa4g1507 537 MobiDBLite consensus disorder prediction 1 36 - -
Psa4g1507 537 ProSiteProfiles Zinc finger C3H1-type profile. 425 453 IPR000571 GO:0046872
Psa4g1507 537 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Psa4g1507 537 SMART c3hfinal6 471 498 IPR000571 GO:0046872
Psa4g1507 537 SMART c3hfinal6 238 265 IPR000571 GO:0046872
Psa4g1507 537 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Psa4g1507 537 SMART c3hfinal6 425 452 IPR000571 GO:0046872
Psa4g1507 537 MobiDBLite consensus disorder prediction 71 103 - -
Psa4g1507 537 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Psa4g1507 537 SUPERFAMILY CCCH zinc finger 429 453 IPR036855 GO:0046872
Psa4g1507 537 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Psa4g1507 537 PANTHER PROTEIN PHOSPHATASE RELATED 4 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1507 Psa-Chr4 105282837 105286641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1507 422 513 C2H2 Transcription Factor Family AT3G02830 48.387 3.82e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g1507 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1507 - - mtr:MTR_4g104260 760.755