Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1496 ATGGCGGCAGGGCGACAAAGTGTTTTGGGGAAGAGGGAGTCTTACAAACATGATTCCGTCAAGGAATTTCAGTATTCTAAGTATGATGATTCTCTTGCAAAAGAAGATAGAGAAGAAGGTGAGATCCTTGTTGATGGGGATGAAGCTTTGCCACCGCCAGAAAAGAGAAGAAAATTCTCTCCCATTGTCTGGGATCTGGCTGAGAAGAAGGCCAAAATCTCTTCCAACGATAGGGTCACACATGTTGCTGAATCTCTATCTCGATCACCTGTTGATGAACAAAGTGCTGAAGAAAAAGGTGTTTTAAGTGAGTTTTCGCTGAATTCCTCTTGTGTTGTTGATGAAAGTGATATGCAGGGGTGGAACATCACAAAGTCTAAATGGGCTTCTGATGATCTTTCACCTATGGGTGATGATGATAAGTACAAGCAAGACAAAAGAAGTTTAAGTTCGGAAGATGGTGGTTGTTCAGGTAGCACAATCACTAGATCTGATGTTGATGATGAGGTTAGTGATTCTCCATCAGATTCGTTTGAAAATAGTGATTTGATGCATGTGCAGAGGAATTTTAACATGTGTCAGAGTTGCAGAACTGTGTCGGAATTTGAAATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGAGGACTGGAGAGACTGTAGCACTAAAGAAGGTGAAGATGGAGAAGGAAAGAGAGGGATTTCCAATGTCAGCATTGAGAGAAATGAATATTCTCTTGTCTTTAGATCATCCCTCTATTGTTGATGTTAAAGAAGTAGTTGTGGATGATGATGATAAGGATGATGGTACTTATATGGTAATGGAGCATATGCAGTATGACCTCAAACAGTTAATGGAGGTAAGGACACAGCCTTTTAGTATGGGTGAAATAAAATCCTTCATGAAGCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAACTGGATTCTCCATAGAGATTTGAAGACATCTAACATTCTGCTGAATAAAGAAGGGAAGCTGAAAATATGTGACTTTGGAATGTCAAGGCAGTACGGAAGCCCGCTTAAGCCATATACTTCTCTTGTGGTTACATTATGGTACAGAGCACCTGAACTATTATTGGGCGCCAAAAAATACTCTAAAGCAATTGATATGTGGTCGTTGGGGTGTATAATGGCTGAACTATTTTCCAGGGAGCCTCTTTTCAGGGGTAAAACTGAAATCGAACAACTTGATAAGATTTTTCGAACCCTTGGTACACCAGACGAGAAAATATGGCCAGGATTTTCCAAATTGCCTGGGTCTAAAGCAAAATTTGTCAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCCGCGTCTTTCACTGGTTTGCCAGTTCTATCTGAGTCGGGATTTGACTTGTTGAGTAAGCTTCTAGCTTATGATCCTGACAAGAGGATTTCTGCTGAAGCTGCTCTGCAACATGATTGGTTCCAATGA 1491 0.4024 MAAGRQSVLGKRESYKHDSVKEFQYSKYDDSLAKEDREEGEILVDGDEALPPPEKRRKFSPIVWDLAEKKAKISSNDRVTHVAESLSRSPVDEQSAEEKGVLSEFSLNSSCVVDESDMQGWNITKSKWASDDLSPMGDDDKYKQDKRSLSSEDGGCSGSTITRSDVDDEVSDSPSDSFENSDLMHVQRNFNMCQSCRTVSEFEMIKKINEGTYGVVYKAKDKRTGETVALKKVKMEKEREGFPMSALREMNILLSLDHPSIVDVKEVVVDDDDKDDGTYMVMEHMQYDLKQLMEVRTQPFSMGEIKSFMKQLLEGVKYLHDNWILHRDLKTSNILLNKEGKLKICDFGMSRQYGSPLKPYTSLVVTLWYRAPELLLGAKKYSKAIDMWSLGCIMAELFSREPLFRGKTEIEQLDKIFRTLGTPDEKIWPGFSKLPGSKAKFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLSKLLAYDPDKRISAEAALQHDWFQ* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1496 496 Gene3D Transferase(Phosphotransferase) domain 1 287 496 - -
Psa4g1496 496 PANTHER CELL DIVISION PROTEIN KINASE 163 496 - -
Psa4g1496 496 Pfam Protein kinase domain 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1496 496 PANTHER CYCLIN-DEPENDENT KINASE 163 496 - -
Psa4g1496 496 ProSiteProfiles Protein kinase domain profile. 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1496 496 MobiDBLite consensus disorder prediction 75 99 - -
Psa4g1496 496 CDD STKc_CDC2L1 196 495 IPR045267 GO:0004674|GO:0005524|GO:0006468
Psa4g1496 496 SUPERFAMILY Protein kinase-like (PK-like) 194 496 IPR011009 -
Psa4g1496 496 MobiDBLite consensus disorder prediction 30 57 - -
Psa4g1496 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Psa4g1496 496 MobiDBLite consensus disorder prediction 135 150 - -
Psa4g1496 496 SMART serkin_6 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1496 496 MobiDBLite consensus disorder prediction 135 181 - -
Psa4g1496 496 Gene3D Phosphorylase Kinase; domain 1 190 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1496 Psa-Chr4 104967573 104972866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1496 201 496 Core Cell Cycle Gene Families AT3G48750 46.488 6.20e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Psa4g1496 Pkinase 3.7e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1496 K08818 - gmx:100788840 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1496 4 104967573 104972866 Psa4g1496 4 104967573 104972866 ECH