Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1490 ATGGATGGTAGGAGGCATTCTGTTGATGTTCCTATTTCTAAAACTCTTGTAGCATTGAGGAGAGTAAGGTCATTGAGGGACCCTTCAACAAATGGTATAAGCAAACTCTCTCCTTTGATTGATAACGAGCATTGGGGAAATGGGATTTCTCTTAGGTTTCTTGATGCTCCTTATGCATGTGAGTTTGATGATAATGGTTGCTTAAGGTCAAAGGGGTTAGATGATGAGATAATTTACTCTAATCCTAAGCAGCAAGGTGTTTTCGGGAATAAGTCGCCGAAAGAAAGCTGTTGTAGTAACCATGAGGCTAAAGGATTGGATTTGGCTTATGTGATTCCTTCTAGTAATCATTTGAAGGATGGAGAATCATACTATTTATCGACTGCGTTGTCGTCGTCGCAATCAGGGAGAGTAGATTACTCAAAATCAACCAGGAAGTTTATGCGCAAGAATCAAGTGAAGCCATTTGAATTGATGGGTGGTGATAGAAAGAGTGTTGAGAGTCCATGCCTTTCGGTTCGTGATGCTATGTCAGCTTATAGTGCCTCGACACAAACACCTCGAGATGTTGATGATGTTTTAGTTGATTACAGTGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCGAGGTTTAGAGACTCGAATCATTATTCTGAAATGGAAGAACTTCCCTTGATGTTGCAGCGTGTTAATGAGACAGATCTTTATGGACATAAAAGCATGAGACACATTGGTGGTGAGATTAGTCCAATGCTTGAAACTCCAAGGAGTTTATCTATGAAATTCAGGCCGAAATCTTTCAATGATTTGGTCGGACAAAATGTGGTTGGGAAGTCACTTTTGGGTGCCATCTCTAGAGGAAGGATAGCGTCGTTTTATCTCTTCCATGGTCCTCGTGGCACGGGAAAAACCTCCGCATCGAGGATATTTGCTGCTGCACTGAATTGCCTCTCTCTCGACAAGCAAAGGCCGTGTGGTTTATGTAGAGAATGTGTTTCGTTTTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTCTAAGAATTAATCGTTCAGACAAGATTAAATCCCTCGTTAAGAACGCATGCGCAACAGCTCCAGATTTGTCGCGTTTTAAGGTGTTCATTATCGACGAATGCCAGTTATTGAATAAGGAAACATGGGCGACTCTTTTGAATAGCTTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGGTCACTCCTGATTTGGATAAGCTTCCACGAAGCGCGGTTTCTCGGGCTCAGAGGTATCACTTTACAAAGATTAAAGATGCCGACATTGCAAGCAGATTGAAAAGAATATGTGCTGAAGAGGGTCTTGAATCTGAGCAAAATGCTTTGAATTTCATTGCTGCTAAATCCTGTGGCTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAGTCACAATTTCCTTAGTCTATGAACTTACTGGTGTCATTTCTGATGACGAATTGCTTGATTTGCTGGACCTGTCTTTGTCATCCGACACTACAAATACCGTCATAAGAGCTCGGGAGTTGTTGAGGTCAAGGATAGATCCTTTACAACTTACATCTCAGCTTGCAAATCTTATTATGGACATTCTTGCCGGGAAATGTGAACTTGGTGGTTCTGAGATCAGAAGAAGATTTTCCGATCGACATATTTCGGAAGCAAACATGCATAAACTTAGTCATGCATTAAGAATACTTTCCGAAACAGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTTTAGAATATTCCTCTGTAGATGCAAATGATACCAAGTTGTGTGTGACAGCTGCATCTAATAGAGATGGTGATTTATGCAGTACATCATCTACAGGTGAAAGTTTGAAGCATCTTGCGATTGCGACAGGCAAGTGTGATGAGAAGTCATATAAAATAGAAGTTCAAGAGGATGACAAGGCGGCGTTGGATTCGATATGGTATAAAGCTACAGACATATGTCAATCTAGAAGGCTCAAAGCTTTTCTCCGGAAGCAAGGGAAGTTGTCCTCGGTTTGTATTAATCAAGGTCTTGCAGTGGTGGAGTTGGAATTCCACCACCGTGTCGATGTAGCTAAAGCCGAAAAGTCATGGAAACAGATTGCAAGTTTCCTACAGTTCATATTAGGATGTAACATTGAGCTCAGAATCAATCATATACCTTGTACTTCAGATTCCAAGTATGCAAAGTTGAAGAGGTCTTCTTTCAATTTCTTTAACTGTTCGCGCAGAATTCTTCGAAAATCACTATCATCCGAAGAACAAGGATGTGAATCAGACTATGCTGATTGCATCTCTCAAAAGCCTATGATGATGGACCAAAAACCTCTATCTCGCTCCTCAGTTTGCGGATCTCGTGTGCCTCCTCCCCTCGAGTCCTACCACGGAATGGAGGTTGTAAAAACTCTGAGAAGCTGCGAAGGGAATTTACTAAGCTCGGGGAAAATATTTTTGAATAGGATAATAGATCAAGAGACGACTCCAAGGAATTCTTTTTCTAGAGATGATTCTGTCAAGGGAGAAGAGTGCAATTACGAACATCTTGCTTCATCGGCCGTTGATTTTGATAATAATAATCGGACAAACTGTTTTCCTCGAACGCTCTGGCTTCATAGAAAATTCTCTACTTCATATGCTTCAAAACAGAAGGATTTTTGTTTTATCAATCCTCAAGTACAAATGTACTGA 2766 0.4071 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWGNGISLRFLDAPYACEFDDNGCLRSKGLDDEIIYSNPKQQGVFGNKSPKESCCSNHEAKGLDLAYVIPSSNHLKDGESYYLSTALSSSQSGRVDYSKSTRKFMRKNQVKPFELMGGDRKSVESPCLSVRDAMSAYSASTQTPRDVDDVLVDYSGCGISCCWSKSPRFRDSNHYSEMEELPLMLQRVNETDLYGHKSMRHIGGEISPMLETPRSLSMKFRPKSFNDLVGQNVVGKSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSLDKQRPCGLCRECVSFFSGRSKDVKEVDSLRINRSDKIKSLVKNACATAPDLSRFKVFIIDECQLLNKETWATLLNSLGSVSQHVVFVMVTPDLDKLPRSAVSRAQRYHFTKIKDADIASRLKRICAEEGLESEQNALNFIAAKSCGSLRDAEMMLDQLSLLGKKVTISLVYELTGVISDDELLDLLDLSLSSDTTNTVIRARELLRSRIDPLQLTSQLANLIMDILAGKCELGGSEIRRRFSDRHISEANMHKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEYSSVDANDTKLCVTAASNRDGDLCSTSSTGESLKHLAIATGKCDEKSYKIEVQEDDKAALDSIWYKATDICQSRRLKAFLRKQGKLSSVCINQGLAVVELEFHHRVDVAKAEKSWKQIASFLQFILGCNIELRINHIPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSEEQGCESDYADCISQKPMMMDQKPLSRSSVCGSRVPPPLESYHGMEVVKTLRSCEGNLLSSGKIFLNRIIDQETTPRNSFSRDDSVKGEECNYEHLASSAVDFDNNNRTNCFPRTLWLHRKFSTSYASKQKDFCFINPQVQMY* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1490 921 Gene3D - 433 495 - -
Psa4g1490 921 Pfam DNA polymerase III, delta subunit 274 432 - -
Psa4g1490 921 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 88 886 - -
Psa4g1490 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 482 IPR027417 -
Psa4g1490 921 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 258 605 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Psa4g1490 921 Gene3D - 253 430 IPR027417 -
Psa4g1490 921 CDD AAA 272 423 - -
Psa4g1490 921 CDD HLD_clamp_pol_III_gamma_tau 432 495 IPR045085 -
Psa4g1490 921 SUPERFAMILY post-AAA+ oligomerization domain-like 502 603 IPR008921 GO:0003677|GO:0006260
Psa4g1490 921 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 88 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1490 Psa-Chr4 104640992 104645100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1490 249 497 Core DNA Replication Machinery Family AT1G21690 23.506 4.48e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1490 - - pvu:PHAVU_003G207500g 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1490 4 104640992 104645100 Psa4g1490 4 104640992 104645100 ECH