Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1460 ATGGTTACCTGTAATTCCCTTTCCCTCTTCTATGGCAGACATCGTCTTCACCCTACAAGGACGCGTTCCTCTTGTTACTCTTTTCCCTCCAATGCTCTCCCAATAGATATTGATGTAGCCAAAGTACTGCAAAAAAGATCAAGAAGAATAGAAGGTCCTAAAAAAAGCATGGAGGACTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCAGATGGGCCACCCCTTCGTGTTCTTCCTATTGGCGGGTTGGGTGAAATTGGAATGAATTGCATGCTTCTGGGGAACTATGATCGATATATCCTCATTGACGCCGGAGTCATGTTCCCAGACTATGATGAGCTTGGGGTCCAAAAGATAATACCTGACACAACATTTATAAAAAAATGGAGCCACAAAATTGAAGCAGTAGTTATAACACACGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGTGTTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCAACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGCTGCTCTGATGGTACTATTCTTCATACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGGAAATTTTTCGACCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGCGAGTCTGTCGTTGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCATCTAATATTAATCGTCTTGGAAGTGTAAAAGCTGCTGCTGATTTGACTGGCAGAAAGTTGGTGTTTTCTGGCATGTCTTTAAGGACATATTTGGATGCAGCATGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAAGTAGAGGATATTGATGCTTATGCGCCTAAGGATTTGCTGATCATGACTACGGGTTCTCAAGCAGAACCGCGTGCTGCTTTAAATCTTGCATCTTACGGAAGTAGTCATGCTTTGAAACTGACAAAGGAAGACGTTCTGTTGTATTCTGCTAAGATTATCCCCGGCAACGAGTCTCGTGTTATGGATATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAAGGAATGTCTACACACATCTGGTCATGGGTATCGTGGTGAATTGGAGGAAGTGCTCAGAATTGTGAGGCCACAGCATTTTCTTCCCATACATGGAGAACTCTTGTTCTTAAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAACACACTGCTGTTATTATGAATGGAGAGATGCTTGGCGTTTCACATTTGAGAAACAGAAAAGTCCTTTCTAATGGATTTATTGCCCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGTGACGGTGACAAAGCATTTGGTTCATCAAGCGAACTGTTCATTGATGAAAGATTGAGAATTGCATTAGACGGCATCATTGTCGTTAGCATGGAAGTATGTCGCCCTCACAGTTTAGACAGTTCGGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTGGACGCACTGAATAAAGCCGCTCATGCTGCTCTTTCAAGCTGCCCTGTTAACAGCCCACTGGCTCACATGGAAAAAACTGTATCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGATGTTATTGCAGTTGCTATAGAAAATCCTGCAGCTGTTCTCGCTACTGAGATAAACACAAGGTTATCTGGAAAGTCCCATGTAGGTGGGATATCAACTTTTAGAAACGCGGTGCATCGACACGAGAGAGAAAATCAATCCACCAAAACGCAAATTAGAGGGATGATTGAGGATGATAATGATGCTGAAGGTCTTCTACCTAAGGAAGATGCCACTACCTCAAATAGAGCTGCGAGTAATTTGTCTGAAACAGAGAATGGTCCTGAAGATGCTGAAATCAAACCAGTGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATTGGTGTGCGCAGGGAATTTGAGGACACATTTCAATTAGTGAAGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAACTTGTTGGCTTATGGTATCAACAAAAATCCTAGGCAGTGTAGATCTATGTGGACATCTCTGTTACAGAAATATGAGGAGATTAAAAATGAGAACAGAGAGGAAAGATGGCTATATCTGGAAGACATGGAAAAGGTTCTGTCTGATATTGAGGCACCAGCAAAAATATGA 2457 0.4151 MVTCNSLSLFYGRHRLHPTRTRSSCYSFPSNALPIDIDVAKVLQKRSRRIEGPKKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLLGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPVLDSQTPIFASSFTMELIRKRLKDHGIFVPSQLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKFFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTGRKLVFSGMSLRTYLDAAWKDGKSPIDPSTLVKVEDIDAYAPKDLLIMTTGSQAEPRAALNLASYGSSHALKLTKEDVLLYSAKIIPGNESRVMDMLNRISEIGSTIVMGKKECLHTSGHGYRGELEEVLRIVRPQHFLPIHGELLFLKEHELLGKSTGIQHTAVIMNGEMLGVSHLRNRKVLSNGFIALGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALNKAAHAALSSCPVNSPLAHMEKTVSEMLRKMVRKYSGKRPDVIAVAIENPAAVLATEINTRLSGKSHVGGISTFRNAVHRHERENQSTKTQIRGMIEDDNDAEGLLPKEDATTSNRAASNLSETENGPEDAEIKPVKRNKWKEEEVKKLIGVRREFEDTFQLVKGNNVFWEEISKNLLAYGINKNPRQCRSMWTSLLQKYEEIKNENREERWLYLEDMEKVLSDIEAPAKI* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1460 818 PANTHER RIBONUCLEASE J 1 714 - -
Psa4g1460 818 PANTHER RIBONUCLEASE J 720 814 - -
Psa4g1460 818 Gene3D - 278 428 IPR042173 -
Psa4g1460 818 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 720 814 - -
Psa4g1460 818 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 714 - -
Psa4g1460 818 SMART Lactamase_B_5a 89 286 IPR001279 -
Psa4g1460 818 Pfam Myb/SANT-like DNA-binding domain 725 807 IPR044822 -
Psa4g1460 818 CDD GT1 726 791 - -
Psa4g1460 818 MobiDBLite consensus disorder prediction 683 723 - -
Psa4g1460 818 ProSiteProfiles Myb-like domain profile. 720 784 IPR001005 -
Psa4g1460 818 Gene3D - 81 493 IPR036866 -
Psa4g1460 818 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Psa4g1460 818 Gene3D - 529 636 - -
Psa4g1460 818 Pfam Beta-lactamase superfamily domain 100 255 IPR001279 -
Psa4g1460 818 Gene3D - 728 789 - -
Psa4g1460 818 MobiDBLite consensus disorder prediction 699 713 - -
Psa4g1460 818 SMART sant 724 786 IPR001005 -
Psa4g1460 818 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 432 470 IPR011108 -
Psa4g1460 818 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1460 Psa-Chr4 102761062 102770103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1460 712 809 Trihelix Transcription Factor Family AT1G13450 31.068 4.56e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa4g1460 Lactamase_B_2 1.2e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1460 - - cam:101513472 1330.47