Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1453 ATGTCTTCCAAAAAATCCTCTTCCTCTGAAGATACCAATTCTCCCTCACCAAAACGCCAAAAGGTCGACAATGGCGGTTCGCCGGAGAAAATGACCACTCCAGAACGCCAAAAGGTCGATAATGGTGGTTTGCCGGAGAAATTGAGTATTCCAGAACGCCAGAAGGTTGACAATGGGTGTTCGCCGGAGAAAATTAGTATTCCAGAACGCCAAAAGGTCAATAGTGTGAAGAGTCCTAGCAAGACTGGCGCTACGCCGGCTGTTCCAGAGACAGTGCCGGTGGCTCCAAGATTAAGGCGGTCCAATGGAAGCGCACTTATTTGTGGCAGTCTGTGGAATGTTTTAGAAGCTGAAGCTGATACATGGGGCCATTTGTTGTCGCAGACTGCAGAGAATCCAAATGTGGCTGTTTTCGGACCAATTTTTACAATTGGTTCCAGTAGAAACTCCAACCTGATATTGAAGGATCGGCCTTTATGTGAATGTTTTTGCCAGATCACACGTGTCGAGTGCTCGGGAAGTGATGCAGCCGTGCTAGAAAGTACTGGTAGCAAAGGATCTGTGCTAGTAAACGGGTTACCTGTGGATAAGAATACCATAATTAGGCTTTACTCGGGTGATGAGGTGGTTTTTGATGTGGTGGGAAATCATTTATATATTTTCCAGCAGAAATTGCCTTCTCCTCCTAAATACAAAATAGACCATACTGATATCTTTAGATTTTCTAGTCTTTGTGATGTTGAAGAAGTTAAGTTCGATGGGTTGAAATTAGCTCCATTTAGTAGGAGTAATAGAGCAGCTAATGTTGGAGCCAGTGACAAAAATACACCTATTGGTTGCGATCTGGAGGCTGGCACAGAGCTATTCAATGTAAATCAGCAGGTATTGGAAGAAATAGCCGAGTCATTACTCATGAACACAGTAAACTGTTCAGCGTTTGAAGAAGATCTTGGTGCTGCAATACTGGACGGAAAAGAAATAGACATCTCTTTTGACAACTTCCCATACTATTTAAGTGTGAACACAAAGAATGTTTTGGTTGCTTCATGCTTTATACACCTGAAGCATAAAGAACATCAAAAGTACACTCTAGATCTTACTGCCATAAACCCTCGTATTTTGCTATTAGGGCCAGCTGGATCAGAAATATATCAGGAGACATTGGCAAAAGCACTTGCGAAACACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTGTCTTCCAAGGAATCTGAGTTGCTCAAAGATGGATTTAACACTGAAAAATCCTGCAGCAGCGGCAAACAAAATTCTACAATCACAGACATCGCTAGAACCATGGACCCATCAGCTAATGAAATAGAGACATCTACCTCTTCAGAGGCACCCACATCAAATGGCCTTGAGTCTCAACATAATTTGGATCCTGATAAAATACCATCCACCACTGTGACAGCCAAAAAATGCTTGTTCAAATTAGGTGATAGAGTGGAGTTTAGCTGCCCTTCTTCTGATGGCTTGTATGAAAAATCTTCAAGGGGCCCACCTAATGGTAGTCGGGGGAAGATTGTCTTGCTATTTGATGATAATCCACGCTCTAAAATTGGTGTGAGATTTGATGAACTCATACATGACGGTGTTGATCTTGGAGGTGAATGTGAGGTTGGCCGAGGCTTTTTTTGCAATGTCACTGATCTTCGTTTGGAAAACAGTGGTGCGGCAGTACTGGACAAATTACTTATTGATTCATTGTTTGAGGTTGTTTATAGTGAGAGTAAAAATGCACCATTCATTTTGTTCATGAAAGATGCCGAGAAGTCAATAGTTGGAAAGGGATGTCCATTTTCATTTAGAGATAAACTTGATACACTTCCAAACAATGTGGTGGTAATAGGTTCACACATTCTTACTGACAATGACAATTGCAAGGAAAAGCCACATCCCGCTGGTTTACTTGTTAAACAACTTGGTGGCAGTAAGGCTGCACTTCTTGACTTGACCGTCTTGGGTAGTCCTGGACAATTGCATGACAAGGAAAGGGAAGTACCAAAGCTAAACGAAGCTTTAACTAATATTTTCCCAAATAAAATTACAATTCACAAACCACAGGATGAGGTATTTCTAGCATCATGGAAGCAGCAACTGGATCGAGATGTAGAGGCCTTGAAAATAAAAGCAAATTTACATCAACTACGCATTGTTTTGAGCCATTTTGGAATTGAATGTGAAGGACTTGAGACCTTGTGCATTAAAGATCAGACACTTACGAATGAAAATGCGAAGAAGATCATTGGTTGGGCTCTAAGCCACCACCACATGCAGAATTTCGAAGCTAATCCAGATTCAAAGCTTATATTGTCGTGTGAGAACATCCATTATGGATGCGGGATCTTGCAGTCTTTCCAAAATGAGTCAAAAAGCATGAAGAAGTCTCTTAAGGATATTGTAACTGAAAACAATTTTGAAAAGAGACTTTTGGCTGATGTTATTCCACCAAGTGACATCAATGTTACTTTTGATGATATTGGAGCTCTTGAAAACGTTAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTACAGAGACCTGAGCTTTTTTGTAAAGGGCAATTGACCAAGCCATGCAAGGGCATCCTATTATTTGGCCCCCCCGGAACAGGCAAAACAATGCTTGCAAAGGCAGTTGCAACTGAAGCTGGTGCAAACTTCATCGACATTTCTATGTCAAAAATTACGTCTAAGTGGTTTGGTGAGGGTGAGAAGTATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAGCTGCTCCTAGTGTTATATTTATTGATGAAGCTGATAGCATGTTGGGTCGAAGGGAAAATCCAGGGGAGCATGAGGCCACGCGGAAAATGAAAAATGAATTCATGGTTAATTGGGATGGTTTACGTACAAAGGATTCTGAACGAGTTCTTGTGCTTGCTGCCACTAACAGGCCTTTTGACCTAGACGAGGCTGTCGTTAGGAGGCTACCACGAAGATTGATGATAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTTGCGAAAGAGGAATTGTCTCCTGATGTTGATCTGGATGCAGTAGCAAGCATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGCGTAACTGCTGCACATTGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTAGTGCTCTAGAAGAAGGTCGACCTGCTCCTGCATTATGTAACAGTGGGGACATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTGTGTGCCAGTGTTTCTTCTGAGTCAGTAAATATGACCGAGCTTGTACAGTGGAATGAACTATATGGTGAAGGTGGTTCAAGAGCAAAGGAAACACTCAGCTATTTCATGTAG 3426 0.4156 MSSKKSSSSEDTNSPSPKRQKVDNGGSPEKMTTPERQKVDNGGLPEKLSIPERQKVDNGCSPEKISIPERQKVNSVKSPSKTGATPAVPETVPVAPRLRRSNGSALICGSLWNVLEAEADTWGHLLSQTAENPNVAVFGPIFTIGSSRNSNLILKDRPLCECFCQITRVECSGSDAAVLESTGSKGSVLVNGLPVDKNTIIRLYSGDEVVFDVVGNHLYIFQQKLPSPPKYKIDHTDIFRFSSLCDVEEVKFDGLKLAPFSRSNRAANVGASDKNTPIGCDLEAGTELFNVNQQVLEEIAESLLMNTVNCSAFEEDLGAAILDGKEIDISFDNFPYYLSVNTKNVLVASCFIHLKHKEHQKYTLDLTAINPRILLLGPAGSEIYQETLAKALAKHFGAKLLIFDSHLLLGGLSSKESELLKDGFNTEKSCSSGKQNSTITDIARTMDPSANEIETSTSSEAPTSNGLESQHNLDPDKIPSTTVTAKKCLFKLGDRVEFSCPSSDGLYEKSSRGPPNGSRGKIVLLFDDNPRSKIGVRFDELIHDGVDLGGECEVGRGFFCNVTDLRLENSGAAVLDKLLIDSLFEVVYSESKNAPFILFMKDAEKSIVGKGCPFSFRDKLDTLPNNVVVIGSHILTDNDNCKEKPHPAGLLVKQLGGSKAALLDLTVLGSPGQLHDKEREVPKLNEALTNIFPNKITIHKPQDEVFLASWKQQLDRDVEALKIKANLHQLRIVLSHFGIECEGLETLCIKDQTLTNENAKKIIGWALSHHHMQNFEANPDSKLILSCENIHYGCGILQSFQNESKSMKKSLKDIVTENNFEKRLLADVIPPSDINVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIDISMSKITSKWFGEGEKYVKAVFSLASKAAPSVIFIDEADSMLGRRENPGEHEATRKMKNEFMVNWDGLRTKDSERVLVLAATNRPFDLDEAVVRRLPRRLMINLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHCPIKEILEKEKKERASALEEGRPAPALCNSGDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRAKETLSYFM* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1453 1141 CDD FHA 139 222 IPR000253 GO:0005515
Psa4g1453 1141 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 98 227 - -
Psa4g1453 1141 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 293 1141 - -
Psa4g1453 1141 SMART AAA_5 873 1010 IPR003593 -
Psa4g1453 1141 Pfam ATPase family associated with various cellular activities (AAA) 877 1006 IPR003959 GO:0005524|GO:0016887
Psa4g1453 1141 Gene3D - 1009 1103 - -
Psa4g1453 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1116 IPR027417 -
Psa4g1453 1141 Gene3D - 835 1116 IPR027417 -
Psa4g1453 1141 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 293 1141 - -
Psa4g1453 1141 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 98 227 - -
Psa4g1453 1141 Coils Coil 711 731 - -
Psa4g1453 1141 MobiDBLite consensus disorder prediction 451 476 - -
Psa4g1453 1141 MobiDBLite consensus disorder prediction 1 31 - -
Psa4g1453 1141 MobiDBLite consensus disorder prediction 1 90 - -
Psa4g1453 1141 MobiDBLite consensus disorder prediction 71 85 - -
Psa4g1453 1141 CDD AAA 875 1008 - -
Psa4g1453 1141 Gene3D - 121 227 - -
Psa4g1453 1141 Pfam AAA+ lid domain 1030 1065 IPR041569 -
Psa4g1453 1141 SUPERFAMILY SMAD/FHA domain 124 224 IPR008984 GO:0005515
Psa4g1453 1141 ProSitePatterns AAA-protein family signature. 980 999 IPR003960 GO:0005524|GO:0016887
Psa4g1453 1141 ProSiteProfiles S4 RNA-binding domain profile. 184 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1453 Psa-Chr4 102002035 102013352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1453 872 1078 Calmodulin-binding Proteins AT3G56690 37.441 2.41e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1453 - - aprc:113849024 1485.32