Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1423 ATGGAGATGGAACGCGTCTTCGAATTTCCTCATACTCACATGGATCGGCGCCCTAGAAAGAGAGCGAGGCTGGGCTGGGATGTCCCTGAGGTTCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGATGTTGGGAATATTTCCAGCTATGCTCCTTCAGGGGTTTCTTCAGAACATACCACTAGTTCCCTACTTGTTAAGGGTGTTGCACGAAATGGTTCACCTCCTTTGCGAGATGACGACAAAGATGGCCATTACATGTTTGCTGTTGGAGAAAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAGAGAAAGGAAATGGTTGCCATAAAAATTGTCCGTGGAATTAAGAAGTATCGGGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTCGGTAAAAATGATATAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTTATGCATGATTTACGCATGATCCATACTGATCTGAAGCCTGAAAACATACTGCTTGTTTCATCAGACTATGTCAAAGTTCCTGACTATAAGATTTCATCTAGATCGCCAAACTCATATTTCAAAAAAGTGCCCAAGTCAAGTGCTATCAAGGTTATTGATTTTGGGAGCACCACATATGAGCGAGTAGATCAAAGTTACATTGTATCGACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCGTGTGATATATGGAGTGTGGGGTGTATACTGGTTGAGTTATGCACGGGTGAAGCTTTATTCCAGACTCATGAAAATTTAGAGCACCTTGCCATGATGGAGAGGGTTCTTGGTCCACTACCAATGCATATGTTGAAGAAAGTAGACCGACATGCTGAGAAGTATGTCAGAAGAGGTAAATTAGACTGGCCAGTAGGTGCAACCTCGCGGGAGAGTATTAAAGCTGTAACTAAGCTTCCTAGATTACAGAACCTTATAATGCAGCATGTGGATCATTCAGCCGGTGACCTTATACATCTACTGCAAGGCTTACTTAGATACGACCCGTTGGAAAGAATTACTGCTAAGGAAGCCCTGAGACATTCCTTTTTCATGAGGAGATCACATTAG 1287 0.4242 MEMERVFEFPHTHMDRRPRKRARLGWDVPEVPKAQVGLFFGQDVGNISSYAPSGVSSEHTTSSLLVKGVARNGSPPLRDDDKDGHYMFAVGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKNDIGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKKVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPLERITAKEALRHSFFMRRSH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1423 428 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1423 428 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Psa4g1423 428 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 426 - -
Psa4g1423 428 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1423 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Psa4g1423 428 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Psa4g1423 428 CDD PKc_CLK 85 423 - -
Psa4g1423 428 PANTHER KINASE AFC1 1 426 - -
Psa4g1423 428 SUPERFAMILY Protein kinase-like (PK-like) 85 424 IPR011009 -
Psa4g1423 428 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1423 Psa-Chr4 100028500 100032228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1423 263 423 EF-hand Containing Proteins AT5G22840 30.899 4.03e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Psa4g1423 Pkinase 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1423 K08287 - gmx:100804452 804.668