Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1397 ATGAAAGGGTATAATCTCTATAATATATATGAAAATAGATTATTTGTAACGCCCAGGGAATATAGGTTAAGAAAAATGGCATCATCATCCAGCTCATACAATTCACCTTGTGCCGCCTGCAAATTTTTGAGGAGAAAATGCATGCCAGGATGCATTTTTGCACCATACTTTCCACCAGAAGAGCCACAAAAATTTGCAAACGTGCACAAAATATTCGGTGCCAGCAATGTGACAAAGCTTCTCAACGAACTCCTCCCACACCAAAGAGAGGATGCAGTGAACTCACTTGCCTACGAAGCCGAAGCACGGGTGAGGGACCCTGTTTATGGCTGTGTAGGTGCTATCTCTTTTCTTCAAAGACAAGTTCAGAGGCTCCAAAAGGAGCTTGATGCTGCTAACACTGATCTTCTTCGTTATTCACTCACTGATATCCCTCCACCTCCACCGTCGTCTCTTTCTGTGCCGCCCGGAATGGTGTCAGTTCAACAAATGCCGCAAAGACAGTTTAGTGGAGGTGTTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATACTTCATCAGAGGACATGAGTGAGGGTGGTGGAGGAGGAAATCATTTGTGA 606 0.4389 MKGYNLYNIYENRLFVTPREYRLRKMASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDIPPPPPSSLSVPPGMVSVQQMPQRQFSGGVYSSFPYSLPWTDTSSEDMSEGGGGGNHL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1397 201 Coils Coil 115 142 - -
Psa4g1397 201 Pfam Lateral organ boundaries (LOB) domain 36 132 IPR004883 -
Psa4g1397 201 PANTHER ELONGATED PETIOLULE 1 28 199 - -
Psa4g1397 201 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Psa4g1397 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 28 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1397 Psa-Chr4 98612979 98614413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1397 26 199 AS2 family AT5G63090 65.306 2.53e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g1397 LOB 3.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1397 - - gmx:100775922 289.271