Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1392 ATGGGTCGCCATTCCTGTTGTTTAAAGCAGAAATTAAGAAAAGGTTTATGGTCACCGGAAGAAGATGAGAAGCTTTTCAATCACATAACTAGATTCGGTGTTGGTTGCTGGAGTTCTGTTCCCAAACAAGCCGGACTTCAAAGATGCGGAAAAAGTTGTAGATTGAGATGGATAAACTATTTGAGGCCCGATTTAAAGAGAGGAATGTTCTCGCAACAAGAAGAGGATGTTATAATTAGTCTTCATGAGCTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCGGGGAGAACCGATAATGAAATTAAGAATTTCTGGAATTCGTGTTTAAAGAAGAAGCTTATGAAGCAAGGGATTGATCCAGCAACACATAAGCCTCTAACAGAACCATATATTAAGGAAGAGAGCAAATTAACAGAAAAAACAGCAACAAATCCGATGCAAATTCCATCGGTTACATCACAAGGTTCATCGTTTCTTATAAGTGATTCGAGTTACTTTGATAATAATGGCTTATCAGAAGCTTCTAGAGATATTTTCAGTAGCAAATCAGCATTGGATCCTTTGTTCTGCTATGATTTCCAATCTGGTTATACCTTACCTATGAATAATTATCAGAGTGAAAGCCAATTTGGTATAAATCCAAGCTATGGTTTTTCTTCAATGCCGAGTCTAACGAATTCGGATCACGCGGTCGTGTCGGTAACCGAGTTTTCAGACAACAATTCACCTTCAAAAATCAGTTCATTATTGTTCATGAATGATCAAGTGAAAGAAAGTAATTCAAGCAATAGCTCCAACATGAGCACTATTTATCCTTCTCAGATGAGAACTACCATGATTGAAAATAATAATAATAATGCAGGATTTTCTTGGGATGGAGATAACAAATTAGACCCTTTGTTTCAGTTTCAAGTGAATGCTATAAAATCTGAAGATTTTGGAACTAGTTCATGGGAAGAAGGACAAATTCAAACTCAGAATTCAATAGATTTCAATAGCTATCCTTTAACATCACTCTCAGAAGATTTAACAGAAGCAAATTTTGATGTATTCCATCATATCTGA 1074 0.3613 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDVIISLHELLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLTEPYIKEESKLTEKTATNPMQIPSVTSQGSSFLISDSSYFDNNGLSEASRDIFSSKSALDPLFCYDFQSGYTLPMNNYQSESQFGINPSYGFSSMPSLTNSDHAVVSVTEFSDNNSPSKISSLLFMNDQVKESNSSNSSNMSTIYPSQMRTTMIENNNNNAGFSWDGDNKLDPLFQFQVNAIKSEDFGTSSWEEGQIQTQNSIDFNSYPLTSLSEDLTEANFDVFHHI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1392 357 Gene3D - 11 67 - -
Psa4g1392 357 PANTHER MYB DOMAIN PROTEIN 55 1 353 - -
Psa4g1392 357 CDD SANT 70 109 IPR001005 -
Psa4g1392 357 CDD SANT 17 61 IPR001005 -
Psa4g1392 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa4g1392 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa4g1392 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa4g1392 357 Gene3D - 69 145 - -
Psa4g1392 357 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Psa4g1392 357 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa4g1392 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa4g1392 357 PANTHER MYB TRANSCRIPTION FACTOR 1 353 - -
Psa4g1392 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa4g1392 357 SMART sant 13 63 IPR001005 -
Psa4g1392 357 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1392 Psa-Chr4 98262872 98264763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1392 1 131 MYB Transcription Factor Family AT4G01680 83.969 3.05e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g1392 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1392 K09422 - gmx:100811140 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1392 4 98262872 98264763 Psa4g1392 4 98262872 98264763 ECH
Psa4g1392 4 98262872 98264763 Psa5g2709 5 205705886 205707393 PCT