Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1345 ATGGCCATCAGAGGCGTTGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCCACCAGCGTAGTTATTGTTGCAATTAATTGGAAGCGCTACCATTCTTGTACATACCCATTGCACATATGGATTGTGGTGGACTATACTGCTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAATGGCTTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATACGCCCGTTTCTGTGGAAGATTGGTACCATGTGGTTCAGGAGTGCCAAGAGCTGTTTGCCTGAAGGGTCAGAAATGGGGATTTCTCATCTTGGTTACTTTTTGCTACTGTGGACTTCTTTGCATTGCTTGCATGTCAGTGGGAAAGTGGTTGACTCGACGACAAGCACACTTAGTGCGTGCCCAACAGGGTATTCCAGTGTCTGAATATGGGGTTTTGGTCGATATGATCCGCGTGCCTGATTGGGCATTTGAAGCCGCGGGTCAAGAGACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACACCAGCTCAGAGAGAAGCAGTTGAAGCATTGATTCAGGAACTCCCAAAGTTCATGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTTCGTGGCTTGCCTTGTGCACACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTGTTCCCAAATCTTGATCTTAGTGCCCTGTCCAATCTCCGTCCAGATTCTGAACGATCTTCTGCCAGTGTTGTGACAACAACTAGCTATGTGAGAGGCCAACCTTCCAGTCAAAGTTACCTGTTAAGGTTACAGGGACTTCTCCGCCCAGTGCGTTCTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCTTTGCAAAATGCTGAGAATGGTGTTGTTGTACCTATTGTGACACAAAATGCACCAAACAGAGTCCAAGTCTCTTCTGTGGAATGCATGCCTGTTAGTCATTCCTCTGCACAAACTTAG 1083 0.4709 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQRYARFCGRLVPCGSGVPRAVCLKGQKWGFLILVTFCYCGLLCIACMSVGKWLTRRQAHLVRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFMLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTSYVRGQPSSQSYLLRLQGLLRPVRSEIAGPVGDTDNALQNAENGVVVPIVTQNAPNRVQVSSVECMPVSHSSAQT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1345 360 Pfam Ring finger domain 213 255 IPR001841 -
Psa4g1345 360 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Psa4g1345 360 CDD RING-H2_RNF111_like 213 257 - -
Psa4g1345 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 260 IPR013083 -
Psa4g1345 360 SMART ring_2 214 254 IPR001841 -
Psa4g1345 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 99 340 - -
Psa4g1345 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 86 - -
Psa4g1345 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 99 340 IPR044793 GO:0004842|GO:0010182
Psa4g1345 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 86 IPR044793 GO:0004842|GO:0010182
Psa4g1345 360 SUPERFAMILY RING/U-box 196 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1345 Psa-Chr4 94264762 94269757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1345 58 342 C3H Transcription Factor Family AT3G47990 64.078 1.77e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1345 K16284 - gmx:100812016 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1345 4 94264762 94269757 Psa4g1345 4 94264762 94269757 ECH