Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1341 ATGTTTCATTCAGTGGTGTCTGTTACACCTAATTCTGTCATGGTTCTTGAGACAAACCTCAGAGAAAACTATGCCTCACAACCATTGCACTTGCATGAAAACTACTTAAAACCAAGTATGAAAGATGAGCTTCCTAATTTCAATGCTCAATCCTCTCAGGGTAATTTCTTGCAAGATTTTCACCATATTGATCAGTTTCACGTGCATGGCTCTTCATCGTCTAATCATGTTTTTGGGGTCCAAACTCAAAATTTTGATCCTTTTGGTAATGAACAATGCGCAAATACAGGTTTTGAAGTTTATAATGATAAGTCTTTTCCTGAGAACAATAATAGTAGTAATCAACATGCTCATTTTATTGACAATTTTCAATATGACGGTTATGGTTTGAATATTCCTAGAAGGAATCATCTTGATCTTATGGTTGAAAACCAAAGCTATTTTCCATTTAATAATGCTTCAGAAACCAAACCGTTGAACTATGTTGTACCAGATGATGAAGTCTCAAGCATAGCACCAACAAGTTATTACCAAAGAGGTGATTTGAATAGAAACAACAGGCTACTATCACCGACCACGAGAAGAGCGTTTAAAGCGAAGAAGAAATCAAGCATAGTGAAGGGACAATGGACGGTCGATGAAGATAGAATGTTGATTCAAATGGTGGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAGATTGCCTGGAAGAATAGGGAAACAATGCAGAGAAAGATGGCATAACCATTTAAGGCCTGACATTAAGAAAGACATATGGACTGATGAAGAGGACAAGATATTGATCCAAGCTCATACTGAGATAGGAAATAAATGGGCAGAAATTGCGAAAAGATTGGCAGGAAGAACTGAAAACTCAATAAAAAATCATTGGAATGCAACAAAGAGAAGACAATATTCGAAAAGAAAATGCCGCTCGAAGTATCCTAGAGGCACACTTCTGCAGGAATATATCAAGAGCTTGAACTTGGACCAAAATCCACCAAGAGACTTTCGAAAAAAATCTTGTTCTAATGCTAAGAAAACCATTACTTGTGGCACAAGTAAAGAAGCAATACAACAAATTCCTCAACCACAGATCATGAATCAGTTTTGTCCCAATGACCAATCAGTGCCGAACTACGAGTTTAATGATTTTTGCTTGGATGATAATTTGTTTGAAGAAGGATGTGGTATAGATTCTCTGCTAGAAGATATGGCAAGTGTTCCTACAATGGATGAGAAAGAATTTGATGAAAAACTATGTGATAATAATAAGGGAAGCATGCAAGTTGTTAATCTTGATGAACATCAATTTGAGACTGAGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATCTCTCAAGTTAATCAAACTATTTGA 1395 0.3634 MFHSVVSVTPNSVMVLETNLRENYASQPLHLHENYLKPSMKDELPNFNAQSSQGNFLQDFHHIDQFHVHGSSSSNHVFGVQTQNFDPFGNEQCANTGFEVYNDKSFPENNNSSNQHAHFIDNFQYDGYGLNIPRRNHLDLMVENQSYFPFNNASETKPLNYVVPDDEVSSIAPTSYYQRGDLNRNNRLLSPTTRRAFKAKKKSSIVKGQWTVDEDRMLIQMVEQYGMRKWSHIAQRLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHTEIGNKWAEIAKRLAGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDQNPPRDFRKKSCSNAKKTITCGTSKEAIQQIPQPQIMNQFCPNDQSVPNYEFNDFCLDDNLFEEGCGIDSLLEDMASVPTMDEKEFDEKLCDNNKGSMQVVNLDEHQFETEIEVKKEMDLVEMISQVNQTI* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1341 464 ProSiteProfiles Myb-like domain profile. 254 304 IPR001005 -
Psa4g1341 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 308 IPR017930 -
Psa4g1341 464 SMART sant 258 306 IPR001005 -
Psa4g1341 464 SMART sant 206 255 IPR001005 -
Psa4g1341 464 CDD SANT 210 253 IPR001005 -
Psa4g1341 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 257 IPR017930 -
Psa4g1341 464 PANTHER BNAC07G50190D PROTEIN 115 333 - -
Psa4g1341 464 SUPERFAMILY Homeodomain-like 205 300 IPR009057 -
Psa4g1341 464 Pfam Myb-like DNA-binding domain 207 253 IPR001005 -
Psa4g1341 464 Pfam Myb-like DNA-binding domain 262 301 IPR001005 -
Psa4g1341 464 Gene3D - 261 321 - -
Psa4g1341 464 CDD SANT 262 304 IPR001005 -
Psa4g1341 464 PANTHER MYB PROTEIN-RELATED 115 333 - -
Psa4g1341 464 Gene3D - 206 259 - -
Psa4g1341 464 ProSiteProfiles Myb-like domain profile. 202 253 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1341 Psa-Chr4 93970772 93972600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1341 139 415 MYB Transcription Factor Family AT4G18770 51.220 4.56e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g1341 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1341 K09422 - gmx:100816653 588.956