Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1331 ATGGCAGCGTCTCCATCTCCTCAATCATCTCTTGCGTCGCAAACGATTAACGACGACGGAAATAATAGTTCTGTGAAAGAAACAACAACTTCTTCATCCATAAGCAAAATTAGTCCACTTATTTTGTTAGTTATAATAGTATTAGCAATAATCTTTTTTCTCTATGGACTTGTCCAGTTAATATTATGGTTACTGATGAAAAGGCCATCCTCTTCATCTCATTATAATTCCAACAGATTCCAAGAATCGACTCGAACTCGATCTCTTCAGAGGCAACTACAACACCTATTCCACTTGCATGATTCAGGTCTTGACCAAGCTTTCATAAATACTCTTCCTGTTTTCAACTACCAAGATTTACTGGGATTGAAGGAGCCTTTTGACTGTGCTGTGTGTCTATGTGAGTTTTCTGAACAGGATAAGCTGAGGTTGGTTCCTATATGCAGCCATGCCTTTCATATGAATTGTCTTGACACATGGCTTCTCTCAAATTCTACTTGTCCTCTTTGTAGAGCAAATATCTCTAACAATAGTTTCTCTTTGGAGAATGTTAACGTTGTTGAGGATTCTTTGGTTCTGTCACATAGGTTCAATGTCAATGGTGATAAAGAGAATATTATTGAGAAACAAATAGGTGACAAAAGGGTGTTTTCTGTGAAGCTTGGAAAATTCAGAAATAATGGATTGGAGGATGGTAGTAGTACTGGTAGTTGTAGTTTGGATGAAAGGAGATGTTATTCAATGGGTTCATATCAATATGTGTTTTGTGATTCAAATTTGGAAGTGGTTTTGTCTCAATCTTGTGGTGATGATGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGAGTAGAAGCAAAGGTGAGAGTTTCTCGGTTTCTAAGATATGGCTTTGGTCTAAGAAGAGCAAATTTCCTAGTTCTAATACTGTTTTTCCTTGA 939 0.3738 MAASPSPQSSLASQTINDDGNNSSVKETTTSSSISKISPLILLVIIVLAIIFFLYGLVQLILWLLMKRPSSSSHYNSNRFQESTRTRSLQRQLQHLFHLHDSGLDQAFINTLPVFNYQDLLGLKEPFDCAVCLCEFSEQDKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANISNNSFSLENVNVVEDSLVLSHRFNVNGDKENIIEKQIGDKRVFSVKLGKFRNNGLEDGSSTGSCSLDERRCYSMGSYQYVFCDSNLEVVLSQSCGDDENGNVEGKRIGSRSKGESFSVSKIWLWSKKSKFPSSNTVFP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1331 312 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Psa4g1331 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 180 IPR013083 -
Psa4g1331 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 312 - -
Psa4g1331 312 SMART ring_2 129 170 IPR001841 -
Psa4g1331 312 CDD RING-H2_PA-TM-RING 128 171 - -
Psa4g1331 312 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 312 - -
Psa4g1331 312 SUPERFAMILY RING/U-box 108 176 - -
Psa4g1331 312 MobiDBLite consensus disorder prediction 1 28 - -
Psa4g1331 312 Pfam Ring finger domain 128 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1331 Psa-Chr4 93348815 93350464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1331 28 303 C3H Transcription Factor Family AT2G18650 40.653 1.66e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1331 - - aprc:113846147 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1331 4 93348815 93350464 Psa4g1331 4 93348815 93350464 ECH