Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1318 ATGAATACTCATCTTCCCAATCATAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCATCCTTGCCAAGGAATATCCACCGGAACACTCGTCGCTTCTCTAATCACTCTCTCGCAAACCATATGCAATTTCCAACCTCAAATATTTCCAACGCAAAAACGAAACGCAAGAGAAACAATACGTCAAATTTCTATCATTTCAATATTCCTCCAAGAAATTCAAGACAATTGCTACTTAATCCCAAACTCAATTATCATCTCTTTCTCAGAGCTTCACTTTACTTTACAAAAGATTCATTTTTTAATGCAAGATTGTACTCTTGAAGGTGCTAATCTTTTATTGCTCTCGAAATCCCGACACGTGGCGGATCAATTTTGCTCTCTTATTCGCGCCGTCGCAACTACACTAGACGTTTTGCCTTTACACAGAATCGAAATTTGCGACGAAGTGAAGGAGTTAGTTGAGTTAGTAGCAAAACAAGCGAGGAAAGCTAAATTCGAAGTCGACCCCAGCGACGAGATTGCGACGAAAAAACTCCATTCAGTACTGCATCAATTCGAGAGAGGAACAGAACCAAAACTTCATACCATGCAGGAAATCCTGGATTACCTAAAAATCAAAAGCTGGAATGATTGCCACAGAGAAATCAAATTCATAGAAAACGAAATAAGCTGGTTAGAGAATCGTGATTGCAACGAACGAGAAGTTCCATTTTTGAGTAGCTTGGTTGGGTTTTTAAGCTACTGTAGGGTAGTGATATTCGAATCACTGGATCAAAATTCTGATCAATACGAAGCTCGAATCAGCACGGAGATAATATCTATAACATGTTTGAATCCAGATGATTTCCGGTGTCCAATTTCACTCGAATTAATGACAGATCCAGTAACAATTTCAACAGGACAAACCTACGACCGTGCTTCAATTCAAAAATGGCTGAAAGCAGGAAACAAAACATGTCCCAAAACAGGAGAGAATCTTAGCAGCACAGAGTTAGTTCCAAACACAACACTGAAGAAGCTTATCCAACAATTCTGCACCGACAACAGAGTTTCATTTTCCAAATCATGTAACCGCAACCGTGACATAACGAGAACAATTTCACCAGGTAGTTCTGCAGAAGCACACGCTATGCAGTTTCTCTCATGGTTTCTCACACGAAGGCTCGTTTTCGGAACAGAACAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACTAGGGCAAGTATTTTCAACAGAGCGTGTTTGATTGAAGTCGGAACGGTGCCGCCATTGTTGGAACTTTTAGCCACGGAAGATAAAACGACGCAAGAGAATGCAATCTCTGCTTTGATGAAGCTTTCAAAGCATAGTAATGGACCCGAAAATATAATGGGCCATAACGGTTTAAAGCCCATTATATCCGTACTTAAAAATGGGCTTAGCCTTGAGGCCCAACAAATCGCAGCCGCTATAATATTCTATCTTTGTTCAGTGAAAGAATACAGAAAATCAATAGGTGAAAATCAAGACGCGATTCCGTGTTTAGTGGAGTTAGTTAAAGAAGGAACAACCTGCGGGAAAAAGAACGCCGTTGTTGCGATTTTCGGACTTCTTTTGCTTCCAAGGAATCACCAACGCGTGATTGAAGCCGGTGCTGTTCACGCGCTTGTTTCTATCATAGATCCTTCGTATAAAGACGAACTTGTAACTGAAGCTTTGGCTGTTATTGCGGCACTAGCTGAGAATTTTGATGGAGCCAACGCTGTGTTGGAAGCTTCGGCGTTACCGTTAATTACTCGGATGTTGCGATCTTCTGCTTCGCGTGCTGGGAAGGAACACTGTGCTTCGATTTTGTTGTCGCTTTGTGTTAATGTTGGTGTGAATGTTGTAGGTGTCCTTGCTAGGGATATTACGCTTATGCCCTTGCTATATTCGCTTCTTACGGATGGTACTGCTCATGCTGCTAAGAAAGCGCGTTTTCTCATCAAAATTCTACATGATTTCAATGAAACAGCAACTTCTCGATTGAAAGGTTCTTCAGTTTTGCGTCAATTGAATGGGTTAGAACTTAGAAATTAG 2067 0.4127 MNTHLPNHRDRRILSFPAVHPCQGISTGTLVASLITLSQTICNFQPQIFPTQKRNARETIRQISIISIFLQEIQDNCYLIPNSIIISFSELHFTLQKIHFLMQDCTLEGANLLLLSKSRHVADQFCSLIRAVATTLDVLPLHRIEICDEVKELVELVAKQARKAKFEVDPSDEIATKKLHSVLHQFERGTEPKLHTMQEILDYLKIKSWNDCHREIKFIENEISWLENRDCNEREVPFLSSLVGFLSYCRVVIFESLDQNSDQYEARISTEIISITCLNPDDFRCPISLELMTDPVTISTGQTYDRASIQKWLKAGNKTCPKTGENLSSTELVPNTTLKKLIQQFCTDNRVSFSKSCNRNRDITRTISPGSSAEAHAMQFLSWFLTRRLVFGTEQQKNKAAYEIRLLTRASIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHSNGPENIMGHNGLKPIISVLKNGLSLEAQQIAAAIIFYLCSVKEYRKSIGENQDAIPCLVELVKEGTTCGKKNAVVAIFGLLLLPRNHQRVIEAGAVHALVSIIDPSYKDELVTEALAVIAALAENFDGANAVLEASALPLITRMLRSSASRAGKEHCASILLSLCVNVGVNVVGVLARDITLMPLLYSLLTDGTAHAAKKARFLIKILHDFNETATSRLKGSSVLRQLNGLELRN* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1318 688 Pfam U-box domain 280 350 IPR003613 GO:0004842|GO:0016567
Psa4g1318 688 SMART arm_5 452 493 IPR000225 GO:0005515
Psa4g1318 688 SMART arm_5 410 451 IPR000225 GO:0005515
Psa4g1318 688 SMART arm_5 536 577 IPR000225 GO:0005515
Psa4g1318 688 SUPERFAMILY ARM repeat 393 662 IPR016024 -
Psa4g1318 688 PANTHER OS07G0532750 PROTEIN 8 671 - -
Psa4g1318 688 CDD RING-Ubox_PUB 283 325 IPR045210 -
Psa4g1318 688 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Psa4g1318 688 SUPERFAMILY RING/U-box 280 353 - -
Psa4g1318 688 Pfam Armadillo/beta-catenin-like repeat 414 446 IPR000225 GO:0005515
Psa4g1318 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Psa4g1318 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Psa4g1318 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 590 IPR000225 GO:0005515
Psa4g1318 688 Gene3D - 371 682 IPR011989 -
Psa4g1318 688 PANTHER U BOX DOMAIN-CONTAINING 8 671 - -
Psa4g1318 688 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1318 Psa-Chr4 93046783 93050643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1318 4 670 U-box Gene Family AT1G60190 39.528 4.51e-165 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1318 - - mtr:MTR_4g107010 1091.26