Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1306 ATGGCTTCATTTGCAGGCACTACACAGAAATGTAAGGTATGTGAAAAGAAAGTCTACTGGATGGAACAACTCACAGCTGATCATAAAGTGTACCACAAATCTTGCTTTAGATGCCACCATTGCAAGGGTAACCTCAAGCTGAGTAACTATTGTTCCTTTGAGAGTGATGTTTATTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCTATTTGGACAAAAGCTTTGAAGGTATTGCAAGAATTTATAGAGCTGAAAGATTTGGTGATCAGGTTCAAGCCAATAACAAGGTTTCAAAATTGTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCTGCAAAACATTGTACCCAATTGAAAAGGTGACTGTTGATGGGAAATCATACCATAAGGTTTGCTTTAGGTGTACACATGGAGGTTGTTTGATTAGTCCATCAAATTATGTGGCTCATGAGAATCGTTTTTACTGTAAACACCATCATACTCAGCTATTCAGACAGAAGGGTGATTTCAGCCAATTTGACAAGATTGAACGAGTTCTTGGGGTTCAAAATACCATCATTTGA 570 0.3772 MASFAGTTQKCKVCEKKVYWMEQLTADHKVYHKSCFRCHHCKGNLKLSNYCSFESDVYCKPHFDQLFKMTGYLDKSFEGIARIYRAERFGDQVQANNKVSKLFAGTQEKCVGCCKTLYPIEKVTVDGKSYHKVCFRCTHGGCLISPSNYVAHENRFYCKHHHTQLFRQKGDFSQFDKIERVLGVQNTII* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1306 189 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Psa4g1306 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Psa4g1306 189 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Psa4g1306 189 SMART lim_4 10 62 IPR001781 -
Psa4g1306 189 SMART lim_4 109 161 IPR001781 -
Psa4g1306 189 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Psa4g1306 189 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Psa4g1306 189 Gene3D Cysteine Rich Protein 5 75 - -
Psa4g1306 189 Gene3D Cysteine Rich Protein 104 174 - -
Psa4g1306 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Psa4g1306 189 Pfam LIM domain 11 65 IPR001781 -
Psa4g1306 189 Pfam LIM domain 110 165 IPR001781 -
Psa4g1306 189 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Psa4g1306 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Psa4g1306 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1306 Psa-Chr4 92565313 92566826 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Psa4g1306 LIM 1.9e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1306 K09377 - gmx:100792627 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1306 4 92565313 92566826 Psa4g1306 4 92565313 92566826 ECH