Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1296 ATGACTCCCGCCGGTGAAATTTTCCGGTCCAATTTCACGGAATTGTTAGAGGAATCTCCTTCCGGTGCGGGTGAACTGCACGTCCTTGCTGTTGATGATAGCCTTGTTGATCGCAAGGTTATTGAACGTTTGTTAAAGATTTCTTCATGCAAAGTTACTGTTGTGGAAAGTGCAAGACGAGCTCTTCAGTATTTGGGATTGGATGGAGAGAATACTGATATTGGTTTTGATGGTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCTGGGATGACAGGGTATGAACTACTCAAGAAAATCAAGGAGTCTTCTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCGTCCGAAAATGTTTTGACTCGAATTGATAGATGCCTTGAGGAAGGAGCGGAGGATTTTCTATTGAAACCGGTCAAGTTGTCAGATGTAAGACGCTTGAAAGATTTTGTCATGAGAGGTGAAGTGAAGGATGGTGAGAAAAGTTCTCTAAAAAGAAGACGATCATCAGATGATAGTAGTCCATCTCTATCCGCCACATTCTCGCCAATGCGCCATTCATGCGATCCACCATCATCAGTTTTCTCACCACTCTCACCATCACCATTATCATCCAAGAAATCTAGATTGTGA 639 0.4225 MTPAGEIFRSNFTELLEESPSGAGELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQYLGLDGENTDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFVMRGEVKDGEKSSLKRRRSSDDSSPSLSATFSPMRHSCDPPSSVFSPLSPSPLSSKKSRL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1296 212 SMART REC_2 26 150 IPR001789 GO:0000160
Psa4g1296 212 CDD REC_typeA_ARR 28 149 - -
Psa4g1296 212 MobiDBLite consensus disorder prediction 160 174 - -
Psa4g1296 212 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Psa4g1296 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 212 IPR045279 GO:0009736
Psa4g1296 212 SUPERFAMILY CheY-like 25 153 IPR011006 -
Psa4g1296 212 MobiDBLite consensus disorder prediction 160 212 - -
Psa4g1296 212 Gene3D - 26 189 - -
Psa4g1296 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 212 - -
Psa4g1296 212 MobiDBLite consensus disorder prediction 175 212 - -
Psa4g1296 212 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1296 Psa-Chr4 91723684 91725716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1296 5 174 Response Regulator Gene Family AT3G48100 67.052 4.33e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa4g1296 Response_reg 7.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1296 K14492 - gmx:100796843 281.567