Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1290 ATGTTTTTTTTTAATTTGACATGGTGCTATGATGGAGCAAGGAGTTTCGTTGTTTGGAATCAACCTGATTTTTCAAAGGAATTGTTGCCCATATTCTTTAAGCATAACAAATTCTCGAGTTTTGTCAGACAACTTAACACCTATGGCTTTAGAAAGGTTGGTCAAGAACAATGGGAATTCACAAATGAAGATTTTGTAAAAGATCTACCAAATCTCATGAAGAATATCCACATGCGCAGACCATATTTTAGCCATTATGTGCCTAATACTCATAGCCAACGGGCGACAACTTCTGGTGTTAGTGTTGCTGCTGCTCCATTAACAGAATCAGAGCGGTGGAATTTTAAAGCTCAGATAGAAAAAATCAGACATGAAAAAGAACAACTACTTATTGAACGTCAGAGGCAGCAAGAAGAGTGGAATCAAAATGAGATGCACTTACATTACTCGAAGGATCGTTTACAACAGTTGGAATTGAATCAACAAAGTTTACTCTCTTCTGTTGGTCAGGTGCTGCCAAAATCCGTGGAAGAGGCAAGTCTCCGGTAA 549 0.3825 MFFFNLTWCYDGARSFVVWNQPDFSKELLPIFFKHNKFSSFVRQLNTYGFRKVGQEQWEFTNEDFVKDLPNLMKNIHMRRPYFSHYVPNTHSQRATTSGVSVAAAPLTESERWNFKAQIEKIRHEKEQLLIERQRQQEEWNQNEMHLHYSKDRLQQLELNQQSLLSSVGQVLPKSVEEASLR* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1290 182 PRINTS Heat shock factor (HSF) domain signature 28 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g1290 182 PRINTS Heat shock factor (HSF) domain signature 41 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g1290 182 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 12 175 - -
Psa4g1290 182 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 175 IPR027725 -
Psa4g1290 182 SMART hsfneu3 3 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g1290 182 Pfam HSF-type DNA-binding 7 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa4g1290 182 Gene3D - 5 80 IPR036388 -
Psa4g1290 182 SUPERFAMILY "Winged helix" DNA-binding domain 7 77 IPR036390 -
Psa4g1290 182 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1290 Psa-Chr4 91067726 91070578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1290 14 174 HSF AT4G18880 52.795 1.04e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa4g1290 HSF_DNA-bind 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1290 K09419 - gmx:100817602 170.244