Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1287 ATGGCTTCTTCCTCAGATCCTCCTTCTTCCAGACACCACACCTACGACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGATAACGTTCATTTAGTCGGTCTCGATGACGCTGCCGCCAGATTAGGGGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTTTGGAGAGCATTGGGGTTCTTGCAAGAAAGGCCAAGAACCAATATACGTGGAAAGGCTTTGGGGCGATTCCTGTTGCCTTACAGGAGCTCAAGGAAGAGGGTTTATGGAAGAATTTCAATTCACAAGAAGGTGGCAATGAAGATATAAAGATATCGGATGAAGATGATGAGGAAGAATCATATTCCCAACCCAATGGAAGTCAGACTGAATCATTATCGTTATCCCAAACCAATGGAAGTCAAACCAATGGAAGTCAGAGTGACAGTCTGAACCCTAATTCTTGTTTTCCCAGATCTTTGAAAAATGATAGAAGAGAAAAATCTTTGGCGCTGCTTACTCAGAATTTCGTCAAGCTTTTTGTCTGCTCTAATCTGGAAATGATATCCCTTGACGATGCTGCGAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAACAAAAGTTAGACGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCGAGAAGACGCATACTACTGATACACGAAAACCAGCATTCAGGTGGCTAGGCTTGAAAGGGAAGACATGGAACGAGGCATCACTTTACAATTCAAATCAAAACGAGTCCAAAAAACGTGCATTTGGAAACGATGTCACAAACATTAGCTTTGCGAGGAATAGAACTGATTCGTTCATTTCTGGAGACTTCAGCCAGAGCTTTAAGAAGCAAAAGACAATGGAAAATGATAGCGGGCTTGGTCAGGAAGATAAAAAGCAGACTTCAACGAACTATCAATTCGGTCCTTTTGCTCCGGCCTTCGTATCGAAATCCGGAACTTCTGAGAATACTAAAGTGAAGCAGGTGCATGATTGGGAGAGTCTAGCATCTGAACATTCCCCTCAGTATCAAAATCAAGCTTTGAAAGAACTTTACTCACACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAGAGGTCAACACAAGTTTTGTAA 1176 0.4192 MASSSDPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDNVHLVGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWKNFNSQEGGNEDIKISDEDDEEESYSQPNGSQTESLSLSQTNGSQTNGSQSDSLNPNSCFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNEASLYNSNQNESKKRAFGNDVTNISFARNRTDSFISGDFSQSFKKQKTMENDSGLGQEDKKQTSTNYQFGPFAPAFVSKSGTSENTKVKQVHDWESLASEHSPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1287 391 SMART E2F_TDP_2 167 247 IPR003316 GO:0005667|GO:0006355
Psa4g1287 391 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Psa4g1287 391 Gene3D - 12 85 IPR036388 -
Psa4g1287 391 Gene3D - 162 249 IPR036388 -
Psa4g1287 391 PANTHER TRANSCRIPTION FACTOR E2F 5 382 IPR015633 GO:0000978|GO:0006357
Psa4g1287 391 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
Psa4g1287 391 Pfam E2F/DP family winged-helix DNA-binding domain 169 247 IPR003316 GO:0005667|GO:0006355
Psa4g1287 391 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Psa4g1287 391 SUPERFAMILY "Winged helix" DNA-binding domain 169 248 IPR036390 -
Psa4g1287 391 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 382 - -
Psa4g1287 391 MobiDBLite consensus disorder prediction 125 157 - -
Psa4g1287 391 MobiDBLite consensus disorder prediction 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1287 Psa-Chr4 90485868 90488827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1287 12 382 E2F-DP Transcription Factor Family AT3G48160 55.409 5.88e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Psa4g1287 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1287 K09391 - gmx:100795252 518.85