Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1283 ATGGTCTCCACCTCATTGCCGTCTGAAACTCTTATATTCAGCACCACGCACTCATTCTCATCTCTCTATCTATCTCTTCTTTCTCTCACTCTTTCTCTATCTGTTCCTTTCCCCGAGTCACTCACTCGTTTTTCTACCGATTCTCACCGAGTCCGATTTCTTCTAGAATCATCGCTAGTTCCGACTATGTCTTCCGCCTCCTCCGCCGCTGTTTCCGGCGAATTTATGCTGTTCGGAGTTAGAGTTGTGGTTGATTCCATGAGGAAGAGTGTTAGCATGAACAATCTCTCACAGTATGAACAACCTCACGACAATAACAAAAACAGTATCAAGGATGATAACAACAAAGAAGTTCTCGCCGCCGGTTATGCCTCCGCTGATGACGCCGTTCCGAATAACTCCGGCAGGAACCGCGACCGCGAGCGGAAACGAGGAATTCCTTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCTAGGAACTACGTGAAAACGCGAACGCCTACGCAGGTTGCAAGCCATGCTCAGAAGTATTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTAGATCTAGTCTCTTTGATATCACCACCGATTCGGTCTCTGCAATTCCAATGGAGGAAGAACATGTCAAGACTCAAGACAGTGTTTCACAAGTACAGCCCATGTGCGCTGCAGCACCTGAAACTAGAAAAAGCAATGGATTTCCTTTTATGTCAGTATATCATTTGGGTGTTGATGAGAGTCCAATGGAAGAACTCACTCTAGGACAAGGAAATGCGAAACAAAATTTCCCAACCAATCTATTCCATCCAATTCCTTTTGTTGTTTCAGATCCTAAAGCTTCCACTGTGTCTGATATCACCTCTAGTTCAAGTTCATCCATTGAACCTCCAACACTTTCACTTGGGTTGTCCTTCTCATCTGATCAAAGGAAGACATCATCATCAACACACTCACCTTTACATGCAATGCCATGTTTCAACAATGGAGATAACATCATAAGCGTTGCTTAA 1059 0.4523 MVSTSLPSETLIFSTTHSFSSLYLSLLSLTLSLSVPFPESLTRFSTDSHRVRFLLESSLVPTMSSASSAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPHDNNKNSIKDDNNKEVLAAGYASADDAVPNNSGRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSAIPMEEEHVKTQDSVSQVQPMCAAAPETRKSNGFPFMSVYHLGVDESPMEELTLGQGNAKQNFPTNLFHPIPFVVSDPKASTVSDITSSSSSSIEPPTLSLGLSFSSDQRKTSSSTHSPLHAMPCFNNGDNIISVA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1283 352 MobiDBLite consensus disorder prediction 122 144 - -
Psa4g1283 352 PANTHER KIN2 69 352 - -
Psa4g1283 352 ProSiteProfiles SANT domain profile. 148 196 IPR017884 -
Psa4g1283 352 ProSiteProfiles Myb-like domain profile. 140 192 IPR001005 -
Psa4g1283 352 Pfam Myb-like DNA-binding domain 147 192 IPR001005 -
Psa4g1283 352 MobiDBLite consensus disorder prediction 316 335 - -
Psa4g1283 352 SUPERFAMILY Homeodomain-like 142 197 IPR009057 -
Psa4g1283 352 Gene3D - 146 198 - -
Psa4g1283 352 SMART sant 144 194 IPR001005 -
Psa4g1283 352 CDD SANT 147 192 IPR001005 -
Psa4g1283 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 196 IPR017930 -
Psa4g1283 352 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 69 352 - -
Psa4g1283 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 194 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1283 Psa-Chr4 89941482 89944008 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g1283 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1283 - - gmx:778059 348.977