Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1278 ATGGCCTCCAATCTCACCAACCTCACCATTCCTCCTCCTCCTCCTCCTTCTTCTTCTTACCGTCCCCCAATCGATCCCAACCCATCTCCACAAATCATCTACAGTAGGTCCCACTCCTTCGTAGGTCCCTCCCCTCTCATCCCCCCTCCCTCCGACGACACCAACACCAACAACAACTCCCTTTTCTTCCTCGACGAACTCGCTTCCAACTCCGACGAAGAAAACGACGACCAAATCCAACCACCCTTCCAACACAAATTCGGACCCTCCGATTTCCAAATTCTCAAAGTCATAGGACAAGGTGCCTTCGGCAAGGTCTTCATGGTCAGAAGAAAAGGCGATTCAGATTCTTCCGACGACGCTAACGGAATCTTCGCAATGAAGGTCATGAGGAAAGATAACATCATTAAGAAAAATCACGTCGATTACATGAAAGCCGAGAGAGATATTCTCACTAAAGTTCTTCATCCTTTCATCGTTCCTCTTCGCTACTCTTTCCAAACTAAATCTAAATTGTATTTGATTTTGGACTTCATTAATGGAGGACATCTCTTCTTTCAATTATGTCGACAAGGAATTTTTAGTGAGGATGAGGCAAGGATTTATACTGCTGAGATTGTATCTGCTGTTTCACATCTTCACAGCAAAGGCATCGTGCATCGGGATCTTAAACCTGAAAACATACTCATGGATTCTCATGGCCATGTGATGTTAACTGATTTTGGAATGTCGAAAGAGATTGAGGAATCTGAGAGATCTAACTCTATGTGTGGGACTACAGAATATATGGCTCCGGAAATCCTTTTGGGTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTGTTCTTTTGTATGAAATGATAACCGGGAAGGCACCATTTACACATAACAACAGAAAGAAACTACAGGAGAAAATTATCAAAGAGAAAATCAAACTTCCACCATACCTTACTGGTGAAGCTCATTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCATCTACAAGGTTAGGCAGCGGGCCAAATGGAGATGAACAAATCAAAAATCATAAGTGGTTCAGGACAATCAATTGGAACAAATTGGAGGCGAGAGAACTGCAACCTAAGTTTAAACCATCTGATGTGTCTGGAAAAGATTGCACAGCTAATTTTGATCGATGCTGGACAACAATGCCGCTTGAGGACTCTCCTGCATCAACTCCTACAGCAGGTGACCATTTTCAGGGCTATACTTATGTTGCACCAAATCCGTGGCTTTCTTCTAGATAA 1275 0.4337 MASNLTNLTIPPPPPPSSSYRPPIDPNPSPQIIYSRSHSFVGPSPLIPPPSDDTNTNNNSLFFLDELASNSDEENDDQIQPPFQHKFGPSDFQILKVIGQGAFGKVFMVRRKGDSDSSDDANGIFAMKVMRKDNIIKKNHVDYMKAERDILTKVLHPFIVPLRYSFQTKSKLYLILDFINGGHLFFQLCRQGIFSEDEARIYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIEESERSNSMCGTTEYMAPEILLGKGHNKDADWWSVGVLLYEMITGKAPFTHNNRKKLQEKIIKEKIKLPPYLTGEAHSLLKGLLQKDPSTRLGSGPNGDEQIKNHKWFRTINWNKLEARELQPKFKPSDVSGKDCTANFDRCWTTMPLEDSPASTPTAGDHFQGYTYVAPNPWLSSR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1278 424 MobiDBLite consensus disorder prediction 1 47 - -
Psa4g1278 424 SMART serkin_6 92 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1278 424 Gene3D Transferase(Phosphotransferase) domain 1 179 374 - -
Psa4g1278 424 ProSiteProfiles AGC-kinase C-terminal domain profile. 356 424 IPR000961 GO:0004674|GO:0005524|GO:0006468
Psa4g1278 424 Pfam Protein kinase C terminal domain 377 414 IPR017892 GO:0004674|GO:0005524|GO:0006468
Psa4g1278 424 SUPERFAMILY Protein kinase-like (PK-like) 78 384 IPR011009 -
Psa4g1278 424 SMART pkinase_C_6 356 416 IPR000961 GO:0004674|GO:0005524|GO:0006468
Psa4g1278 424 MobiDBLite consensus disorder prediction 8 29 - -
Psa4g1278 424 Pfam Protein kinase domain 92 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1278 424 PANTHER RIBOSOMAL PROTEIN S6 KINASE 28 423 - -
Psa4g1278 424 Gene3D Phosphorylase Kinase; domain 1 90 399 - -
Psa4g1278 424 ProSiteProfiles Protein kinase domain profile. 92 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1278 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Psa4g1278 424 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 423 - -
Psa4g1278 424 ProSitePatterns Protein kinases ATP-binding region signature. 98 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1278 Psa-Chr4 89717611 89720790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1278 13 417 AGC Kinase Gene Family AT3G08720 60.047 1.06e-178 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Psa4g1278 Pkinase 9.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1278 K04688 - gmx:100798259 631.713