Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1275 ATGGAGCATCCTTTCTTCAACGATTGCACTTTCTCTTCCGCTAACCCTTCTTTATCAGAAATTTGGCCTCACTTCCCATCCCAAAACAAACGAAACCACTCCCTCTCGGAAAATCACTCTACCACTAAGCATAGAAAACCAGCACCACCAAACAACGATCAAAACGCTGCGTTTAAACCCGAACCAAACGCAATTTCAGCAAACAAACAACAACAACAGAATCAGAAACCTTTTTCTGAACTGTCACCGTCACCGTCACCGTCACCGTCACCGCCGCCGAAGCCGAAGCCGAAGCAAGATTACATTCACGTTAGAGCCAGAAGAGGCCAAGCCACCGATAGTCACAGTCTCGCTGAAAGAGCGAGAAGAGAAAAGATTAGTGAGAGAATGAAAATTCTACAAGATTTAGTTCCGGGATGTAACAAGGTAATTGGTAAAGCACTTGTGCTTGATGAGATAATCAATTATATTCAATCACTACAACATCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAATATGCAACCTTCTATTGAATGTTTCCCTTTAAAAGATGTTGGTGCTCAGCCATTGGATCTTTCTGGAATAGTATTTGGATCGCAAGCAGGAAGGGGCTATGCTCAGGGATCACAGCCAGGATGGCTACATATGCAGCTAGCTGGTGGTTTAGATAAAACATCGTAA 702 0.4288 MEHPFFNDCTFSSANPSLSEIWPHFPSQNKRNHSLSENHSTTKHRKPAPPNNDQNAAFKPEPNAISANKQQQQNQKPFSELSPSPSPSPSPPPKPKPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRLNMQPSIECFPLKDVGAQPLDLSGIVFGSQAGRGYAQGSQPGWLHMQLAGGLDKTS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1275 233 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 233 IPR024097 GO:0006355
Psa4g1275 233 MobiDBLite consensus disorder prediction 82 97 - -
Psa4g1275 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 180 IPR036638 GO:0046983
Psa4g1275 233 Gene3D - 107 185 IPR036638 GO:0046983
Psa4g1275 233 PANTHER BNAC05G07950D PROTEIN 63 233 - -
Psa4g1275 233 CDD bHLH_AtBPE_like 100 179 - -
Psa4g1275 233 Pfam Helix-loop-helix DNA-binding domain 114 161 IPR011598 GO:0046983
Psa4g1275 233 MobiDBLite consensus disorder prediction 22 99 - -
Psa4g1275 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 160 IPR011598 GO:0046983
Psa4g1275 233 Coils Coil 157 177 - -
Psa4g1275 233 MobiDBLite consensus disorder prediction 56 81 - -
Psa4g1275 233 SMART finulus 116 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1275 Psa-Chr4 89360604 89364712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1275 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.110 2.19e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g1275 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1275 - - gmx:100799646 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1275 4 89360604 89364712 Psa4g1275 4 89360604 89364712 ECH