Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1266 ATGGGAGGCGGAGATCCGTCCTTGTCGGATATGGAGGAAGAGGAAGAGGAGGAAAACGGTGTCAAGGTCAACGATTCACCTGACATTCTCTCGCAATTTCGACTTCTCGATGCTCCTATACTTTTGTTCGTTTGTTTTCATAAGGCTCTGCGTTCTGAACTCGATCAGCTTCGTGTGTTTGCTGAAACAGCCTCGTTGGAAGATGATCCGGATCGTTGCCGAGAAATAATTGTTAAGCTTCAACAGAGGTTTCAGTTTGTTAGATTAGCTCATAAGTATCATTGCGCTGCAGAAGATGAGATTATCTTCCATGCACTGGATGCACATGTAAAAAATGTTGTATGTACATATTCCCTTGAACATAATAGCACCGATGGGTTATTTGATTCTATCTTACACTTCTTGGATGAGCTGACGGGCTCTAGTGAGAATATTTCCAAGCTGTTCCGAGAACTTGTGTACTGCATTGATATTTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAATTTGTCTACTAAAGAACAAGCCTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAGACAGACCTTCTCTGGGACATATTTTCACAGGGAGGAGCTTCAAGGTTCTCATGGATCCCAACATATAGAAAATTTTCTTGGGCAGAGTTCTTGCAATAGGAACTACAAAGATGTTTCAAGTCAGATGAAAGTGAATGACAAAGAAACAGAAGATGGGGTCAACCAGGTTAAGGTTCTCCATCTTTGGCATAATGCCATAAGGAAAGATTTGAAAGAAATTCAGCAAGAGCTTTATCTAATAAGAAATTCCGGTTGCTCTCAAAATTTAGACTCAATACTTATCCAGCTAAAATTCTTGGCTGATGTCCTCATCTTCTACAGCAATGCTCTGAAAAAATTCTTTCATCCTATACCGAACAAACTGGCCCATAGCCAATTTTCCAAGTCTATCGAAAACTTACTTGGAGAAAGTCACATTGAGGATATACAACAGTTGCTACTTTATAACTCAGAAAGCGAAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATTATTTATATCAGCAGTCAACAAACAATTTTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTCGAGAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCATGCATATGATGCCACTTGGGTTACTAAAATGCGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAAGAATCCAGGTCAATTCTCTATTGCATAAAGGAAGGAAATAATTCTGTGAGTAAAGCTTTTGCTCCATTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCAATTGAGAAGTTTCGACAGGATTTGCAGTATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAACTTGTGGGTTTTCATTCTTAAGTTCTGACAAGCAGCCACATAAAAGTTGTGGCAAGAATTGTCTGTCCCATTCATCATCTTCTGGAGCCAAAAATGTGAACAAATATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACACTGCTATGAAGTTAAATCAGCATCCAAGATTTCATGCAGCAAATCTGTCTTCTGTTTCCTTTCTTAATGATCCAAAACCAATTGACCTGATATTTTTCTTTCACAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGGACATGATGAGTTTATAGATTTCCAAAAACGGTTCCATCTCATATGTTTTTTACATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCTGCCTTGGAGGCCATAGGTCAGCTCAAAAACATCAGCCTTGCCTACACCTTTGATCACAAACATGAAGTTGAGCACTTTAGTAAAATATCTCGCATTCTTGACAGGCTGTCTGAATTACATCCTTTGGTTTCTACTACTGATTCAAAGATAAGAGTCAAGAGGATGCTAAGGCGTGATCATTTAATCAAGAAGCTGCAAGAAATGTGCAAATCGATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAGAGTTCTTCTCAAACCGAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTGATGGCATCTTTAACACAGGAAGAGCAGCATATTTTAATGTTCTTATGGTCCATGGCTACTAAGAATACAATGTTTGACGAGTGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGCAGCAGATGGGTCAAATGGCGCCCCTCTACAAAATGTTGATCCACTAGATATTATTTCCAAATATTTGTCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCATCGGCCAACAAAAGCATAAACTTTTGGCAGAAGGATCTTACTGGCAATAGTTTTGAGCTCTCCAACTCCAATGTTGATGACAAGGTTAAGGTTACTAATGCAGCACAAAATTATAGTCAATGTTCAAAATGCACAAATCAGTTTCATGATATTAAGAAACATACCTGCAATGAAGTAAAACCAATGGGCATTTTGACAAGTAGGTCTTTTCAACATTTTGATTTGGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGAGGGTAATAAGAAGGGTGTCTCGTGACTCTTGCCTAGATCCTCAGAATAAGTCATACATAATACAGAGTCTACTTACGAGCCGTTGGATTATTAGTCAGAAGATTTCTTCTATGGAAGTCAATATCAAAAGCGATGGGCTGGAATTCCCTGGGAAACATCCATCTTACAAGGACCCTCTCAAACAAATCTATGGCTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGCAATGAACTTCATGCTTGCATACATTGCCATGATGAGGTATCAGATCATTTAATTGACAGAAAATCTATTACAATGATGATGTGTATGAAGTGCTTGGTGATTCAACCAATCAATGCCACATGCTCATCAGTTTCTTGCCGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGAAGATGAAAGGAAAATTTACCACTGTCCCTTTTGTAACTTATGCCGACTTGGAAAGGGTTTGGGTGTTGACTTTTTTCATTGCATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGATACATACATGCAGAGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTTTATTTTAGGATGCTAGATGCATTATTGGCCGAGGAGAAAATGTCTGACGAGTTTTTGGGTCAAACTCAGGTTATTTTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCATTTCTTGTGGTTCCTACAACACCAGAGTTTTATGA 3804 0.3859 MGGGDPSLSDMEEEEEEENGVKVNDSPDILSQFRLLDAPILLFVCFHKALRSELDQLRVFAETASLEDDPDRCREIIVKLQQRFQFVRLAHKYHCAAEDEIIFHALDAHVKNVVCTYSLEHNSTDGLFDSILHFLDELTGSSENISKLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQNLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTQCFNEIAPMERALQEVLVSWLGSNRQTFSGTYFHREELQGSHGSQHIENFLGQSSCNRNYKDVSSQMKVNDKETEDGVNQVKVLHLWHNAIRKDLKEIQQELYLIRNSGCSQNLDSILIQLKFLADVLIFYSNALKKFFHPIPNKLAHSQFSKSIENLLGESHIEDIQQLLLYNSESEMPLTKFVEKLCGKLELFISAVNKQFSFQEIEVFPIFRENCRNGMQVRLLSLSMHMMPLGLLKCVITWFSVHLSEKESRSILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKTSIEKFRQDLQYMFKRRHSFSSEKMKETCGFSFLSSDKQPHKSCGKNCLSHSSSSGAKNVNKYETPYSTGINLHIFFPDTAMKLNQHPRFHAANLSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEGHDEFIDFQKRFHLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYTFDHKHEVEHFSKISRILDRLSELHPLVSTTDSKIRVKRMLRRDHLIKKLQEMCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIIGCMLGRISAEILQDMIPWLMASLTQEEQHILMFLWSMATKNTMFDEWLSEWWNGYSLAKAADGSNGAPLQNVDPLDIISKYLSEEVLNELQEESSANKSINFWQKDLTGNSFELSNSNVDDKVKVTNAAQNYSQCSKCTNQFHDIKKHTCNEVKPMGILTSRSFQHFDLDKSGHYDRLLKLSQDDLERVIRRVSRDSCLDPQNKSYIIQSLLTSRWIISQKISSMEVNIKSDGLEFPGKHPSYKDPLKQIYGCKHYKRNCKLFAPCCNELHACIHCHDEVSDHLIDRKSITMMMCMKCLVIQPINATCSSVSCRNLSMAKYYCRICKLFEDERKIYHCPFCNLCRLGKGLGVDFFHCMNCNACMSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMSDEFLGQTQVILCNDCEKKGAAPFHWLYHKCISCGSYNTRVL* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1266 1267 SUPERFAMILY Zinc hairpin stack 1098 1152 IPR037275 -
Psa4g1266 1267 Pfam Zinc-ribbon 1208 1265 IPR039512 -
Psa4g1266 1267 SUPERFAMILY RING/U-box 1151 1207 - -
Psa4g1266 1267 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 30 1267 - -
Psa4g1266 1267 Gene3D - 1232 1267 - -
Psa4g1266 1267 ProSiteProfiles Zinc finger CTCHY-type profile. 1097 1160 IPR017921 -
Psa4g1266 1267 Gene3D nmb1532 protein domain like 39 196 - -
Psa4g1266 1267 Gene3D nmb1532 protein domain like 613 784 - -
Psa4g1266 1267 CDD RING-H2_Pirh2 1160 1203 - -
Psa4g1266 1267 MobiDBLite consensus disorder prediction 1 23 - -
Psa4g1266 1267 CDD Hr-like 619 764 - -
Psa4g1266 1267 Pfam CHY zinc finger 1032 1107 IPR008913 GO:0008270
Psa4g1266 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1154 1205 IPR013083 -
Psa4g1266 1267 SUPERFAMILY CHY zinc finger-like 1023 1089 IPR037274 GO:0008270
Psa4g1266 1267 CDD Hr-like 46 176 - -
Psa4g1266 1267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1267 - -
Psa4g1266 1267 Pfam Hemerythrin HHE cation binding domain 47 178 IPR012312 -
Psa4g1266 1267 ProSiteProfiles Zinc finger CHY-type profile. 1025 1094 IPR008913 GO:0008270
Psa4g1266 1267 ProSiteProfiles Zinc finger RING-type profile. 1161 1203 IPR001841 -
Psa4g1266 1267 SMART ring_2 1161 1202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1266 Psa-Chr4 88959791 88969808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1266 38 859 C2H2 Transcription Factor Family AT3G18290 32.655 1.68e-124 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1266 K16276 - gmx:100802706 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1266 4 88959791 88969808 Psa4g1266 4 88959791 88969808 ECH