Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1265 ATGACCCTTAAGGGTGGGACAACACAGGCTTGTGCGGCATGCAAATTCCAGAGAAGAAAGTGCACAACTGAGTGCCTTTTAGCTCCGTTTTTCCCTGCAGATCAACCTAAGATATTCCTTAATGTCCACAAACTATTTGGAGTTAGCAACATTGTCAAAATACTTAAGTTCCTCGAACCTGGCCAGAAGAAACCCGCCATGGATTCTATTATCATGCAGGCTAATTATAGAGATAAGTATCCTGTGCATGGATGTTGGGAGGAAATTTGCAGGCTACAATATCAAATATGGATGTTGGAAGAAGAACTTCATGCTGTTTATCAGCAGCTTGAAATTTGTCGACAACAACAGCACCAACAGTTGCCTCATGATGATGTCACTTCGCAGTTGGAATTGGGAATGGGACCGCGTTCGTCAAATGCGCTCGCGCTCTTTAATAACACTCCGCAGCCGCAGAATTACAACACAGTGGCTGCTCCTTTGTCTGTGTCTCAACAGCATTCTTACTCCAACAGCAATAGTGTGGATTAA 531 0.4388 MTLKGGTTQACAACKFQRRKCTTECLLAPFFPADQPKIFLNVHKLFGVSNIVKILKFLEPGQKKPAMDSIIMQANYRDKYPVHGCWEEICRLQYQIWMLEEELHAVYQQLEICRQQQHQQLPHDDVTSQLELGMGPRSSNALALFNNTPQPQNYNTVAAPLSVSQQHSYSNSNSVD* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1265 176 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Psa4g1265 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 7 151 - -
Psa4g1265 176 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Psa4g1265 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1265 Psa-Chr4 88957552 88959779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1265 1 135 AS2 family AT3G47870 49.682 2.85e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g1265 LOB 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1265 - - lang:109357116 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1265 4 88957552 88959779 Psa4g1265 4 88957552 88959779 ECH