Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1264 ATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCTGCTTTTGTTTATCGAATTCATGGATTTATATGTTTCAAAGTGGCTTCGATTATAACTGATTGTAGTGCTAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCAAGGAGAGCTGTTGAGCTTTCGCCGAATTCAATTGAGTATGCACATTTTCATGCCACTGTGATATTGGAAGCAGCAACTGAGGGCAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAGCCCAAATGATCCTGCTAAGGAGACATTACAGGACGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGACCGTATATTACATGTGCAGGCCGAGTTGAGGCAGCTGATTCAGAAGTCAAACATAGCTTCGCTGTCGTCTTGGATGAAGAATCTGGGTAATGGGGAAGAGAGGTTTCGCTTGATTCCTATAAGGAGGGCTTCGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCGAATGAGATTAAGAAGGTTACCAAGACGCCAGAGGAAAGAAGAAAAGAGATCGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGGCACCGCAGTCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGACAGGTGAGAGGCGAAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAAGACTGCCTTAGGATTAAAATATCCGATATCATCTCCCACTTTGGTTCTACAAAGGAGACTTTGCCAAAAGATGTTTTATCTGAAGCATTGTTTTATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTACTGAGATATTTTCCAATCAGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCACCCAAAATGCAGAGAATATTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTGTTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTATCTATAAAGCAAATCTCAAAGGTTCATCTCTTCCAGAGGATTATCTTGCTGAGGGCTACAATGATTGTTTTAAAGATTCAACCAGCTCATACCATGAAAAGGAAAGTTTAGGGTACAGTTTTGATAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGAAAGTAATGCCAGAGAAGGCATCGAAGACCAACAGTATGTGGCAAATCCTGTTACTTATAGTTGGCCAGTATCCGATGACAAGGAGTGCGCAAAACTTCTAGAGAAAATCCATGGAGTGTTTGAAATACTTATTAGACACAAATGTATTGCTGCCAGTCATCTTCACAAGGTCATACAATTTAGTATGGGTGAGCTCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCACACACCAATGTGCATATGCTTTCTGGGTGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCAGCCAAGGTCCTGAGATCCGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGACGAGTCTCTACTGCTAACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTCTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAGCGGTGCTTTTCTGTCCTGGCTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCGGACCAAAGAAGATAAAATATGCCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTGCATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCTTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGGATGTGGGCGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGCAATAGGTTTGAGATAGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGTGACTTCTCAGATATGTGACTTGGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGCTTGCATCAAATGGATGGTTGTGTAGAAATTGCTATTCAGAAACTGAAAGAGCACGCATCTATAGAGATTAGCAAATCTGACGCAGAAATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACATGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCTCTGGTGAAGGTGTACCTAAAGGCACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGACGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACAAGACATGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACTACTCTTGATTGCAGTTCTGATCTAGTATCACCTGATAGTGACTTTCAAGATCACGAGGTTATTTCCATGAATGATGGTGATTTGGAACACCACGAAGAGGAATTTAGACGAAAAATTGAGCTTGAAGAGGAGGAAAAAAAACTTGAAGAAACCTTGGAACTTCAACGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCCGAGCAACAGAAGAAATTATCTGGTACATGTGTAGAGGAAGTGTCAGACAAACTTCAAGGTTGCCAATTGAAGCCTGTTGTCGATGGCTCAGATGCGCAAGAATATGGAAGACTACCTATGCAGGAACAGTTGGGAAAGGAGAATGGATGCCCAAACAATCTGGACGTCGTGCTTATTACCGCAGCAAATGGTTCCATGGCGCCGACTAAATCTCTGGTCGATTCAGCTCCCCCCAAAATTAATCATTTACATCAGTCAAATGTTAAACAAGAAGATATACTCAATGGAATTGGTCCAGAGAATGGTCTACCTTTGCCTGATCGGCGTGCAGGAAAAAAACACAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTACGTCTCATTGGAGGAAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAACAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTAGATACATATCAAGCACGCGGAAATTTGCCTTTGGTTTCAAGTTTGAGGATGCCACAGAGATCTTCCTCACCGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTCAGGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTTATGAATGAAGTGGGGGAATATAATTGTTTCCTCAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCGGAGCATGCTCATGTGGGTAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCACAAAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTAATATTTGACTGCCTTCATCGATCATTTACCCGTGGTTCAGGTGTTTCTGATGCAGAATCAGCGGAAAGCAACTACACGGGGTCTTGGGATTGTGCAGCTGATACTTGTATAGTACATTCACATTTTGGAATGAACATTTCTGAGCAGATGAACTGCTACCATTGTGGTCTTGAGTCCAGACATTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCCCTTGACAAGCTTTTGAATCTTGTGGAGAGAAACCATCAACTTGCGTGTGATCTAGAGGCTGATGGTTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAGCTCCGCCCCGTGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGATGACATAACTGCAACTCTGGCAGCCCTGAGTACCAAAATAGATATCAGTGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCACGACCACGGCCAATGGATTATGTATGATGACAAGACTGTTAAGGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCCCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4689 0.4253 MKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEGKDYEDVVHECERGLAIESPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEERFRLIPIRRASEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGERDDRALDLSSGSSQRTGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSTKETLPKDVLSEALFYAEANKTWKFWVCGICTEIFSNQEGHRQHVMQAHLQTLSPKMQRILPQHVDNEWLEMILNCSWKPLDVSAAVKMLIYKANLKGSSLPEDYLAEGYNDCFKDSTSSYHEKESLGYSFDNCTTERSKYYKIAESNAREGIEDQQYVANPVTYSWPVSDDKECAKLLEKIHGVFEILIRHKCIAASHLHKVIQFSMGELQGLAAGSELLKHDVDHTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDISQGPEIREKIVLNGDASCLLLDESLLLTQFTPGTAQESVFEDMVTPSSPDGISDSSGAFLSWLYSSRSIGDQLSTWIRTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGDVGEFVQRSYESVLKRRREEIAESENEMAYTGNRFEIECISNVLQEAEAMNVNNQYCCDETYPGVTSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKSDAEIIRCVSEVQQLELKLGHVSANDYRAILVPLVKVYLKALLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDCSSDLVSPDSDFQDHEVISMNDGDLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCQLKPVVDGSDAQEYGRLPMQEQLGKENGCPNNLDVVLITAANGSMAPTKSLVDSAPPKINHLHQSNVKQEDILNGIGPENGLPLPDRRAGKKHKRNKNSSKMVDGKLEYVSLEENENIEDKHTDYHMREQAKFHNSQDAKHLLENNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPLVSSLRMPQRSSSPVDRSGLAPLEDSAQDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGRSRSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPQSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSGVSDAESAESNYTGSWDCAADTCIVHSHFGMNISEQMNCYHCGLESRHLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEADGCGKLNHIHHFLSAPPRVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSHDHGQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN* 1563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1264 1562 CDD Peptidase_C19 1320 1559 - -
Psa4g1264 1562 Coils Coil 697 717 - -
Psa4g1264 1562 Pfam Protein of unknown function (DUF627) 1 97 IPR006866 -
Psa4g1264 1562 Gene3D Cysteine proteinases 1216 1560 - -
Psa4g1264 1562 PANTHER UBIQUITIN SPECIFIC PROTEINASE 2 1562 - -
Psa4g1264 1562 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 2 1562 - -
Psa4g1264 1562 MobiDBLite consensus disorder prediction 204 246 - -
Psa4g1264 1562 Pfam Protein of unknown function (DUF629) 256 784 IPR006865 -
Psa4g1264 1562 Coils Coil 947 987 - -
Psa4g1264 1562 SUPERFAMILY Cysteine proteinases 1229 1559 IPR038765 -
Psa4g1264 1562 Pfam Ubiquitin carboxyl-terminal hydrolase 1230 1538 IPR001394 GO:0004843|GO:0016579
Psa4g1264 1562 ProSitePatterns Zinc finger C2H2 type domain signature. 312 333 IPR013087 -
Psa4g1264 1562 Coils Coil 108 135 - -
Psa4g1264 1562 MobiDBLite consensus disorder prediction 874 913 - -
Psa4g1264 1562 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1229 1561 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1264 Psa-Chr4 88917234 88927557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1264 1 1559 C2H2 Transcription Factor Family AT3G47890 53.232 0.0 1568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1264 - - gmx:100799759 2230.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1264 4 88917234 88927557 Psa4g1264 4 88917234 88927557 ECH