Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1252 ATGGAAACTTTAAAGCTTAGATTGCTTTTTTTGTATGTATTTTATCTTGCTATATTCCCTACCTTTGAAGCTAACATAGTTCACTTCGACCAACACTGGCAAAGACGGTCACATGAAGCCAAAAAAGCTGCACATAAGGCTCACCAGTTAAACCCTCAGGGTGTTGCTGCTACTTTCAATAACCATGTCCACAGGCTTTTCAGTGGTTTCAATGGTACAAGGAGGAGTTTAGGCAGAAAATCCCAAAACAAAGGTCCATGCAAAGCGACAAATCCCATCGATAGTTGCTGGAGATGTGATCCTAACTGGGAAAAGAATCGCAAGAAGCTAGCAGATTGTGCTCTTGGTTTTGGCCAAGGCACGACAGGAGGCAAAGATGGTAAAATCTATGTTGTCTCTGATCCGTCCGACAACGATCTTGTTAACCCGAAACCAGGGACATTGCGATACGCAGCCATTCAAAAAGAGCCATTATGGATCATTTTTAAACATAGCATGAACATCGTATTGAAAGCGGAGCTTCTACTAACGGATCACAAGACCATAGATGCACGTGGTGCAAATGTTCATATTAGTGGAGGTGCTCAAATAACAATGCAATATGTGAGAAACATCATCATTCATGGCACACATCCTACTATACTCAGCCAGGGTAACAGGTTTATTGCTCCTCCGAACCCAAATGCAAAAGAGGTGACAAAGAGGGATTATTCACCTGAAAGTGTGTGGAAGAATTGGAATTGGATATCAGAGAATGACTTGATGATGAATGGAGCGTTTTTTATACAGTCTGGAAAAAAGGTTGCAACTATGGGCAAAGATGGCATTTTGCCAAAGCCTGGGAGTTTTGCAGCAGAACTTACTAAATATTCAGGTTCTATAAAATGTGAAGTAAACAAGCCATGTTGA 909 0.4125 METLKLRLLFLYVFYLAIFPTFEANIVHFDQHWQRRSHEAKKAAHKAHQLNPQGVAATFNNHVHRLFSGFNGTRRSLGRKSQNKGPCKATNPIDSCWRCDPNWEKNRKKLADCALGFGQGTTGGKDGKIYVVSDPSDNDLVNPKPGTLRYAAIQKEPLWIIFKHSMNIVLKAELLLTDHKTIDARGANVHISGGAQITMQYVRNIIIHGTHPTILSQGNRFIAPPNPNAKEVTKRDYSPESVWKNWNWISENDLMMNGAFFIQSGKKVATMGKDGILPKPGSFAAELTKYSGSIKCEVNKPC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1252 302 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Psa4g1252 302 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Psa4g1252 302 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Psa4g1252 302 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Psa4g1252 302 SUPERFAMILY Pectin lyase-like 210 271 IPR011050 -
Psa4g1252 302 Gene3D - 210 295 IPR012334 -
Psa4g1252 302 Gene3D - 90 209 IPR012334 -
Psa4g1252 302 SUPERFAMILY Pectin lyase-like 91 209 IPR011050 -
Psa4g1252 302 PANTHER PECTATE LYASE 18-RELATED 210 302 IPR045032 GO:0030570
Psa4g1252 302 PANTHER PECTATE LYASE 18-RELATED 6 211 IPR045032 GO:0030570
Psa4g1252 302 PANTHER PECTATE LYASE 210 302 - -
Psa4g1252 302 PANTHER PECTATE LYASE 6 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1252 Psa-Chr4 88117605 88119181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1252 212 302 Polysaccharide Lyase AT5G15110 53.684 6.66e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1252 K01728 - gmx:100801864 297.36