Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1234 ATGGCTGGTGAAAGACTCTTCACAAACTCTCCTGCAAGTAATTCAAACATGAATACTTTGTTTCATAGTCAACAACAAAACACTTCCCAACAACCTCTTGATTCTCTCTTTCTTTCTTCTTCTCTTCCTTTCTTCGGTTCAAGAACTATGGTGAGTTTTGAAGATGCTCAAGGAGGAAGGAAAAGGTGCAACAGTTATCTCTTCAACGGATTCGATCTAGACGAAAACGGAGACGATGAGATGGATGACTACTTTCAACAATCGGAGAAGAAGCGGCGACTCTCCGTGGAACAAGTTCAGTTTCTTGAGAAAAGCTTTGAGGTCGAGAACAAGCTTGAACCGGATAGGAAAACCAAGATTGCTAAAGATCTCGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGAACAAACAGCTTGAGAAGGATTATGAATCTCTTAATGATAGTTATGAGTCTCTTAAGACTGATTATGATAACATCCTCAAGGAGAAACATAGGTTACAATCTGAGGTGGAAAGTCTCTCTAAGAAGGTACTTGCAAGAGAGACTCAAGAGAGGGAAAGTGAAACAAAGAAACTATTGCAGGAACCAGTAATGAATAAGCCATTGGTTGATTCAGTTTCTGAGGGTGAAGGATCAAAGTTGTCGATTGTTGAGGCTTGTAATGAAAGTAATCATAATAATAATAGCAGACAAGAAGATATAAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGTCCATGTTACAAGGATAGAGTGTTGCAGAGAAATCTGTTTGAACCTGAATATCAATCAGACCTATCACAAGATGATGAAGATAATTTGTTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGCTCATTACTCCAACCCGCATCATAACTCGTCTGGTTATGGATTTCAAGAGGACGACCATCATCATCACGCTCTTTGGTCGTGGTCCGGTTACTAG 984 0.3994 MAGERLFTNSPASNSNMNTLFHSQQQNTSQQPLDSLFLSSSLPFFGSRTMVSFEDAQGGRKRCNSYLFNGFDLDENGDDEMDDYFQQSEKKRRLSVEQVQFLEKSFEVENKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYESLNDSYESLKTDYDNILKEKHRLQSEVESLSKKVLARETQERESETKKLLQEPVMNKPLVDSVSEGEGSKLSIVEACNESNHNNNSRQEDISSARSDILDCDSPCYKDRVLQRNLFEPEYQSDLSQDDEDNLLPPYNIFTKLEDAHYSNPHHNSSGYGFQEDDHHHHALWSWSGY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1234 327 SMART HOX_1 88 149 IPR001356 GO:0003677
Psa4g1234 327 Coils Coil 137 185 - -
Psa4g1234 327 CDD homeodomain 90 146 IPR001356 GO:0003677
Psa4g1234 327 Gene3D - 84 153 - -
Psa4g1234 327 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Psa4g1234 327 SUPERFAMILY Homeodomain-like 76 147 IPR009057 -
Psa4g1234 327 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Psa4g1234 327 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Psa4g1234 327 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Psa4g1234 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 323 IPR045224 GO:0003700
Psa4g1234 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 19 323 - -
Psa4g1234 327 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Psa4g1234 327 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1234 Psa-Chr4 87274484 87277667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1234 46 205 Homeobox Transcription Factor Family AT3G01470 48.750 3.45e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g1234 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1234 - - mtr:MTR_4g107650 446.817