Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1230 ATGGGGAATTGCTTTGGAAGTCGTTCCAAGGGTAATGTCCCTCTCACCTCCCAGCCCAATTCTGCTCCTCTTAGAAGCACTCAATTGTTAGTTCAATCAAGTGCTGCAGCAGTACATGGAAACAGCAATGGAGCTAAACCTGAGATTCTACCAACTCCGAGATCGGAAGGGGACATACTTTCTTCTCCTCATTTAAAACCGTTCACATTTAAGGATCTTAGAAATGCCACTAAAAACTTCAGTCATGATAGTTTAATTGGACAAGGAGGGTTCGGTTACGTTTATAAAGGCTGGATCGATTGTCGGTCGCTTAAAGCCGCAAAGCCTGCTGCTGGAACTGCTGTTGCTGTCAAGAAGCTTAAGCCAGAAGGTTTTCAAGGCCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTGAAACTTACTGGATATTGCCTAGATGGGGATAACAGGCTTCTAGTCTATGAGTTCATGCCCAACGGAAGCTTGGAAAATCATCTATTTCGAAAGGGAACACAACTACTTCCTTGGGCAACAAGAATCAAAGTTGCAACTGGTGCTGCTCGAGGTCTCAATTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCATCGAATATTTTATTAGACTCGGAATTTAATGCAAAACTCTCCGACTTTGGGTTGGCCAAAGCAGGGCCTACTGGCGATCGTTCTCATGTTTCTACTCAAGTCCTTGGAACTCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTGACAACAAGGTGTGATGTCTATAGCTTTGGAGTTGTGCTATTAGAACTACTATCAGGGCGAAACGCGGTCGATAAAACAAAATCAGGAGTGGAACATAATCTGGTAGATTGGGCGCGGCCGTATTTGGGCGATAGAAGGAAACTGTTTCGGATTATGGACACAAGATTAGAAGGGCAGTATCCACAACGGGCAGCTTATACCGCTGCGATTCTTGCATTACAATGTATTAGTGAGGCCAAGTTTAGACCACAAATGTCTGAGGTTTTGGCTACTTTGGAACAATTGCCGGTCATCAGAAATTCACCTAGTCCTTCTAGATTAGAGGCGAAACCAATCTCAAGTCCAATAAGAGAAAGAGTCTGA 1164 0.4373 MGNCFGSRSKGNVPLTSQPNSAPLRSTQLLVQSSAAAVHGNSNGAKPEILPTPRSEGDILSSPHLKPFTFKDLRNATKNFSHDSLIGQGGFGYVYKGWIDCRSLKAAKPAAGTAVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEFMPNGSLENHLFRKGTQLLPWATRIKVATGAARGLNFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGVEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPQRAAYTAAILALQCISEAKFRPQMSEVLATLEQLPVIRNSPSPSRLEAKPISSPIRERV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1230 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Psa4g1230 387 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Psa4g1230 387 Gene3D Phosphorylase Kinase; domain 1 61 165 - -
Psa4g1230 387 PANTHER OS01G0588500 PROTEIN-RELATED 26 374 - -
Psa4g1230 387 PANTHER BNAC02G17010D PROTEIN 26 374 - -
Psa4g1230 387 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Psa4g1230 387 MobiDBLite consensus disorder prediction 1 21 - -
Psa4g1230 387 Pfam Protein tyrosine and serine/threonine kinase 84 301 IPR001245 GO:0004672|GO:0006468
Psa4g1230 387 ProSiteProfiles Protein kinase domain profile. 80 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1230 387 CDD STKc_IRAK 86 362 - -
Psa4g1230 387 Gene3D Transferase(Phosphotransferase) domain 1 166 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1230 Psa-Chr4 87208282 87211419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1230 68 359 Glycoside Hydrolase AT3G07070 53.041 3.94e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa4g1230 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1230 - - pvu:PHAVU_003G191400g 579.711