Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1226 ATGGATTCTGATTCTGGAAGATCTGGTGATGGAGATGGTGGAGTACTCAAGGAAGAGAAGAGAAGTGATGATGAAACTCATCATCAGAAAAAGGAGACTATTGTTGAGGAACCACCCATTGCTAGTACTGAAAAATCAATTGAGACTAGACCAATCACATCCTCTCCCAAAAATGCTAAGGTTGATGATCAGCTTGAGACAACAAAAGCTCAAATGGGTGAAGTAAGAGAAGAAAATCAACGGTTAAAAATGCGTCTCAACAAAATAATGATAGAATACCGAGCACTAGAAATGCAATTTCACAACATGGTTAAGCAAGAAACAGAAAAGAACAATGTTGATCACAATGATGATAATAACCATGAAGAAATAATGGTGGAATCAGATCTTGTTTCGCTTAGCCTTGGAAGAGTTCCTAGTAACAACATTCAGAAAAATGAAGAGAAAGTTAACAAAGTCTCTAAGCTAGCATTGAATAATGATGATGGAGAATTTAAACAAGAGTTGGCTCTTGGATTGGATTGTAAATTTGAAACATCGAAATCAGGTAGCACAACTGACGGATTGCCAAATCAAAATTCGAGTCCGGTGAATAGTTGTGAAGTGGTTCCAACAAAGGATGAAGAAACTGGGGTAACTTGGCCACCAAGTAAGACACTCAATAATGATAAGACGGCCAGAGATGCAGCTGAGGATGAAGTTTCTCAACAAACTCCAGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTACCGTTGCACAGTTGCACCGTCATGTCCGGTTAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCCATTTTAATCACAACCTATGAAGGAACACACAACCACACCCTTCCACTTTCCGCAACAGCAATGGCATCCACAACTTCCGCCGCCGCATCCATGCTATTATCAGGCTCATCAACTTCCCATTCTGGTTCAATCCCCTCATCACAAACCAACAACAATCTCCATGGCCTAAACTTTTACCTACCAGACGGTTCAAAATCGAATCAACTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGACCTCACTACAAACCAATCATCAAACCCTTCATCCTCATCACCCTTTGTTAGATTCAATTCAAACTACAACAACAGCCAACTACCAAGATACCCTTCTTCCACAAGTCTTAGCTTTAGTTCACCTGAATCCAACACAATGCATTGGAATAGCTTCCTCAATTATGCCACCACTCAGAATCAACAACCATATAATAACAACAGAAACCCTAATATTAATAATCTCAACACTTTAAACTTTGGTAGACAACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAATGGTTTACCTACAGATAGTACTATAACTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCAACACTTATTGGAAACAACACTCAACAACAAGGGAATCATCAAAACCAAACTGTAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCAGTGTCATCAAGTTCATTGCCTTCATCAAGTTCTAAAGTAATTGGTTGTGCTTCGAGTTTCTTGAACAAAACGGTGCCAGTGAACTCGCAGACAGGAAGCTTGATGTCACTGTCACCTTCTTTGCCTTTTGCTACAACCAAAAGTGCTTCTGCATCTCCTCCTGGGAATAATAGTGATAACTCCAATTAG 1842 0.3947 MDSDSGRSGDGDGGVLKEEKRSDDETHHQKKETIVEEPPIASTEKSIETRPITSSPKNAKVDDQLETTKAQMGEVREENQRLKMRLNKIMIEYRALEMQFHNMVKQETEKNNVDHNDDNNHEEIMVESDLVSLSLGRVPSNNIQKNEEKVNKVSKLALNNDDGEFKQELALGLDCKFETSKSGSTTDGLPNQNSSPVNSCEVVPTKDEETGVTWPPSKTLNNDKTARDAAEDEVSQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHSGSIPSSQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTTNQSSNPSSSSPFVRFNSNYNNSQLPRYPSSTSLSFSSPESNTMHWNSFLNYATTQNQQPYNNNRNPNINNLNTLNFGRQQNTMESIYQTYMQKNNGLPTDSTITAATKAITADPTFQSALAAALSTLIGNNTQQQGNHQNQTVGENLSQKMKWAEMFPVSSSSLPSSSSKVIGCASSFLNKTVPVNSQTGSLMSLSPSLPFATTKSASASPPGNNSDNSN* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1226 613 MobiDBLite consensus disorder prediction 46 61 - -
Psa4g1226 613 MobiDBLite consensus disorder prediction 183 237 - -
Psa4g1226 613 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g1226 613 MobiDBLite consensus disorder prediction 1 38 - -
Psa4g1226 613 Coils Coil 58 99 - -
Psa4g1226 613 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 606 IPR044810 GO:0003700
Psa4g1226 613 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 28 606 - -
Psa4g1226 613 Gene3D WRKY domain 240 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g1226 613 ProSiteProfiles WRKY domain profile. 251 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g1226 613 SUPERFAMILY WRKY DNA-binding domain 249 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g1226 613 MobiDBLite consensus disorder prediction 1 64 - -
Psa4g1226 613 MobiDBLite consensus disorder prediction 183 201 - -
Psa4g1226 613 Pfam WRKY DNA -binding domain 257 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1226 Psa-Chr4 86477292 86480791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1226 72 542 WRKY Transcription Factor Family AT5G15130 41.093 6.22e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa4g1226 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1226 - - gmx:100793946 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1226 4 86477292 86480791 Psa4g1226 4 86477292 86480791 ECH