Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1211 ATGGTCTTTGTACAGAGCTGTTATAGCAGAGTTTGTATTTTGACCATTATTGGTTACAAAAGACAATCTGATACCAATATTAAGGGTAGCACTGAGTGCGATGGTGTTGGTCTTTTGCGTATTGCTTGGGCTTTTGGTGGTATGATCTTCATCCTTGTTTACTGCACCGCTGGTATCTCTGATCTAATGAAAATTGTTGGATATGAGGCGAATCAAAGCACCAAGACTAAATTTAAGTGGATAAGACTGCTCTGCAAGGGGTTCCAAAGTTCATACTACAACAGGTATGGTGGAGGAGCTAACACTGTTTCTGATGGTTACAGTAAAGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTTGTGCTAGTCTACACTGTTTTCTCTGCTACTGATCCTAAAGGAAGTGCTAGGGATTCTCATGTTCCTGTATTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCAACAATCCCCGTCACCGGAACCGTGGATTTATTGGGTTGGACCATTTATTGGTGCTGCAGTGGCTGCAATCTACCACCAATACATTCCAAGAGGATCAGCAATTAA 585 0.4274 MVFVQSCYSRVCILTIIGYKRQSDTNIKGSTECDGVGLLRIAWAFGGMIFILVYCTAGISDLMKIVGYEANQSTKTKFKWIRLLCKGFQSSYYNRYGGGANTVSDGYSKGTALGAEIIGTFVLVYTVFSATDPKGSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTVDLLGWTIYWCCSGCNLPPIHSKRISN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1211 194 PRINTS Major intrinsic protein family signature 45 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa4g1211 194 PRINTS Major intrinsic protein family signature 115 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa4g1211 194 PRINTS Major intrinsic protein family signature 151 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa4g1211 194 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 84 167 IPR034294 -
Psa4g1211 194 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 61 IPR034294 -
Psa4g1211 194 Gene3D Glycerol uptake facilitator protein. 82 168 IPR023271 -
Psa4g1211 194 Pfam Major intrinsic protein 84 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa4g1211 194 SUPERFAMILY Aquaporin-like 31 178 IPR023271 -
Psa4g1211 194 PANTHER AQUAPORIN PIP2-7 84 167 - -
Psa4g1211 194 PANTHER AQUAPORIN PIP2-7 10 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1211 Psa-Chr4 86037446 86038668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1211 11 167 Major Intrinsic Protein MIP AT3G53420 64.162 4.81e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1211 K09872 - gmx:732604 232.646