Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1195 ATGGGGAGGCCACCATGTTTTGAGAAATATGGGATTAAGAAAGGACCTTGGACTCCTGAGGAAGATATCATCTTAGTTTCTTATATTCAACAACATGGTCCTGGAAACTGGAGATCAGTTCCCACCAATACTGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACAAACTATCTTCGTCCCGGTATCAAACGAGGTAACTTCACAGATCATGAAGAGAAAATGATTCTTCATCTTCAAGCTCTTCTAGGCAACAGATGGGCGGCGATAGCTTCGTATCTTCCTCAAAGGACGGATAATGATATAAAAAACTATTGGAATACACATTTGAAGAAGAAGATGAACAATAATCAAAGTAATGATAATAATCATGAAGATGTTGATTCAGAAGGAAAAACTCGTTCGCAGCCGCTGAAGGGACAATGGGAGAGAAGACTACAAACAGATATTCAAATGGCGAAACAAGCCTTATCTGAGGCTCTATCCCTTCCACAAAACCCAACAACTTTTCCTCAAGAGATGAAACCCTCGTCAAGTTTTTCGCATGAAAATCATCCACCAAATGCTCATATTAATATTCCATCTCCATATGCATCAAGCTATGAAAACATTTCTAGATTGATGGAAAACTGGATGAAATCACCTAACTCATCAGCTGAAACAATATTCAGCAACAACATGCAGGTTACCACTGGAGGATCGAGTTCCAGTGAAGGAGCACAAAGCACAACACAAGATCATCATCATTATCATCTTCATCGTCAAGCTTTGGACTCCGATTTGTTCAGCTTTAATAACTCCACTAAATCTGATTCTGCATCTCGATTTAGGTCAACTCATGAAGAGAACGACAGCTTAACAAAAGAGGGTCTAGATCTCTTCCACCAAGAGAAAAGGAAAATCAATATGGAAACACATGTGCCTCTTACTTTGTTGGAAAAATGGCTATTTGAAGATGGGGTAACAACAACTCATCATGAGTGCAATGAAGATCTTATAAACATGTCATTGGAGGAAAGTACTTCAGATTTCTTTTAA 1044 0.3889 MGRPPCFEKYGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMILHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKMNNNQSNDNNHEDVDSEGKTRSQPLKGQWERRLQTDIQMAKQALSEALSLPQNPTTFPQEMKPSSSFSHENHPPNAHINIPSPYASSYENISRLMENWMKSPNSSAETIFSNNMQVTTGGSSSSEGAQSTTQDHHHYHLHRQALDSDLFSFNNSTKSDSASRFRSTHEENDSLTKEGLDLFHQEKRKINMETHVPLTLLEKWLFEDGVTTTHHECNEDLINMSLEESTSDFF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1195 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa4g1195 347 CDD SANT 69 112 IPR001005 -
Psa4g1195 347 Gene3D - 68 141 - -
Psa4g1195 347 CDD SANT 16 61 IPR001005 -
Psa4g1195 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa4g1195 347 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa4g1195 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa4g1195 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 331 - -
Psa4g1195 347 MobiDBLite consensus disorder prediction 115 143 - -
Psa4g1195 347 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 331 - -
Psa4g1195 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa4g1195 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa4g1195 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Psa4g1195 347 MobiDBLite consensus disorder prediction 125 141 - -
Psa4g1195 347 Gene3D - 13 66 - -
Psa4g1195 347 SMART sant 13 63 IPR001005 -
Psa4g1195 347 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1195 Psa-Chr4 85075473 85076901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1195 1 321 MYB Transcription Factor Family AT5G62470 50.000 1.09e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g1195 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1195 K09422 - gmx:100794319 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1195 4 85075473 85076901 Psa4g1195 4 85075473 85076901 ECH