Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1187 ATGGAAGCTAAGCCACTCATGTATTGGAACTCTTACTACCATGACAAAGATGAAAAGCCATTTCCATTTACCTATTCTTTCAGTGGAAATAGCAGTGGACAATATACTTTCCCGATGAATTTGCCCAAGGAAGAGTTTTCAATTAACGATATCTACCAAGATTTTGTTGACCCTTTATACGAATCTCTCTCCATTGAACCAACACCAAACTTGCAACGCAAAGACTTTGATTTTTATGACTTGAAAGAAGGGTGTTTTGAGTGGAACGAAATGATCGACGAACTGTTTGATAAAGAAAAATTATTTATGAGTTGCAGTGATATGAAGAGAGAGGTTATGGACTTTAAGACAGAAGTAGAAGATGGAAGTTCTAAGAATTTGTCAAGGAAGATTATATCACAGTATTTCTATATGCCAATAACTCAAGCAGCAAGAGAGCTTAATGTAGGTCTCACACATTTGAAAAAAAGGTGTAGGGAATTAGGTTTTCGCAGGTGGCCACATAGGAAACTCATGAGTCTTCAAACCTTGATAAATAATCTTCAGGAGTTAGTGAAAGTGGAGGGGCCTGAGAGTCAAGAAAAGATGAGGAATGAAATTGAGGTGTTGGAAAAGGAAATGAAGTTGGTGGAGGAGATGCCTGATAAGCAATTGGAAGATCGTACGAAAAGGCTTAGACAAGCATGTTTTAAGGCCAATTACAAGAAGAGGAGACTTATGGATCAGAACTTTATATGTTTTAATTAA 747 0.3695 MEAKPLMYWNSYYHDKDEKPFPFTYSFSGNSSGQYTFPMNLPKEEFSINDIYQDFVDPLYESLSIEPTPNLQRKDFDFYDLKEGCFEWNEMIDELFDKEKLFMSCSDMKREVMDFKTEVEDGSSKNLSRKIISQYFYMPITQAARELNVGLTHLKKRCRELGFRRWPHRKLMSLQTLINNLQELVKVEGPESQEKMRNEIEVLEKEMKLVEEMPDKQLEDRTKRLRQACFKANYKKRRLMDQNFICFN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1187 248 ProSiteProfiles RWP-RK domain profile. 109 194 IPR003035 -
Psa4g1187 248 Coils Coil 193 213 - -
Psa4g1187 248 Pfam RWP-RK domain 126 174 IPR003035 -
Psa4g1187 248 PANTHER PROTEIN RKD1-RELATED 98 242 - -
Psa4g1187 248 PANTHER PROTEIN RKD4 98 242 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1187 Psa-Chr4 84726736 84728256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1187 124 238 AtRKD Transcription Factor Family AT1G18790 69.565 1.81e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa4g1187 RWP-RK 6.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1187 - - cam:101509125 263.077