Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1184 ATGAAAAAGAGACAAGTGGTGGTGGTGGTGAAAAGCAACAACAGTTCATCTTCAAGAAATGTTGTACGTTATGGAGAGTGTCAGAAGAATCATGCTGCTACGAGTGGTGGATATGCTGTTGATGGATGTATGGAGTTCATGGCGAGTTCTGGAGATGATGCACTTATATGTGCTGCTTGTGGTTGTCATAGGAACTTCCACAGAAGAAAAGTGGAAAGTGCAGATTGA 228 0.4254 MKKRQVVVVVKSNNSSSSRNVVRYGECQKNHAATSGGYAVDGCMEFMASSGDDALICAACGCHRNFHRRKVESAD* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1184 75 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 70 IPR006456 -
Psa4g1184 75 Pfam ZF-HD protein dimerisation region 22 71 IPR006456 -
Psa4g1184 75 PANTHER MINI ZINC FINGER PROTEIN 3 12 73 - -
Psa4g1184 75 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 73 - -
Psa4g1184 75 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1184 Psa-Chr4 84556701 84558302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1184 1 73 Zinc finger-homeobox gene family AT1G18835 66.667 1.34e-30 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa4g1184 ZF-HD_dimer 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1184 - - ath:AT1G18835 105.531