Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1180 ATGGAAAACATTTCAGTGTTACCATCTAAGGAAGATGAAAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAACTTATAAGTCATTACCTTTACAAAAAGGTTATTGATTCGAATTTCTCCGCCAAAGCTATCGGAGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACAAACAGAGCAACAGAAGCAGGTTACTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGAATGAAGAAAACTCTTGTTTTTTACAAAGGAAGAGCACCAAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTCGAGGGTAAATTCTCTGTTCACAATCTTCCTAAAGCTGCAAAGAATGAGTGGGTTATTTGTAGGGTGTTTCAGAAGAGTTCAGCTGGTAAAAAAACACATATTTCTGGGATAATGAGGTTGGATACACTTGGTAATGAATTTGATTGTTCTGTTTTACCACCACTTACCGATTCGATTGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGTTCTTTGATTCATTCACAAACTCAATTTACGGTGTTTCTTCAAACAATCCACCAGATGTTTTTCAAAGAGGTTCATTATACTCTTCTTCTAACCAATCCGCGGCTAATTTTCAATTTCCCGGTTCTGTTTGCGGTATTCAAGACCAATCAATTTTAAGAGCTCTATATGAAAACAACAGTTTCAAAAGACAGCAGCAGCAACAAATTGTGAGTGTTTCGCAAGAAACAGATCTAACTACTGATATAAACGCCGAAACATGTTCTGTTGTTTCGAATTTTGATATCGGTCGAAGGGCTTTCGAGAATAATAACCATCAACATCGTCCACCACCTGTTGAATTTGATGGTACTTTATGGAATTATTAA 1050 0.3743 MENISVLPSKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSNFSAKAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDTLGNEFDCSVLPPLTDSIGKIKQLNDSAYVPCFSNSIDVQRNQGGFFDSFTNSIYGVSSNNPPDVFQRGSLYSSSNQSAANFQFPGSVCGIQDQSILRALYENNSFKRQQQQQIVSVSQETDLTTDINAETCSVVSNFDIGRRAFENNNHQHRPPPVEFDGTLWNY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1180 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 333 - -
Psa4g1180 349 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Psa4g1180 349 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Psa4g1180 349 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Psa4g1180 349 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Psa4g1180 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1180 Psa-Chr4 84128874 84130881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1180 15 349 NAC Transcription Factor Family AT5G07680 57.647 2.55e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g1180 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1180 - - cam:101502392 609.372