Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1169 ATGGGGAGAGTTAAACTCAAGATAAAGAAATTGGAGAGCACAAGCAATAGACATGTGACTTATTCCAAGAGGAAAAGTGGAATTTTAAAGAAAGCGAAGGAATTATCAATTCTATGTGATATCGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAACCTACCATGTTACAAGGAGAGCGCAGTAATATGGAGGAGATCATTGCAAAATTTGCCCAACTTAGTCCACAAGAAAGGTCCAAACGGAAAATGGAAAGCCTTGAAGCACTGAAAAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGCTCAAGTAGTCAAACGGTGGAGGATCTAACTCATCAAGTGAGAGTTTCGCAAGCGCAACTTGCAGAAATACAACAGAGACTGAGCTATTGGAGTAATCTAGAGAAGATCAACAACTTGGAACATCTTAGACAAATGGAAGAATCGCTCAGGGAATCAATCAATCGGGTGTGTATACAAAAGGAAAATTTAGGAAAGCGCCAATTAATGTCACTTGAATGTGCTAACCAGTTACCGGAAGGGATGACTTTACCCTTGATGATGACTGGTCTACAAGAATCCCAACCCTTGTCTTGGCTTCTAAGTGGTGATAATCACCAGTTGATGTTACCTAGTGAACCAAAATTTCTGCCATTTAGCGATAATGGCAATAGAGACGCGGAGTGCTCCACCGACATTTCACTCCCAGGGTACTCCGGTTATATTGGGAATGGCAAACTTGAGGTTGGAAGCTCTCCAAATGTCACTAATTTGGGTCAGGGAAATGGTAACTTGAATGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTACAACATTGTGAGCAGCAGTTTGCATACCCTCCTTCCCAAGATCTCGAGGACCTGAAACATCACCAAACAATGAATAGTAAATCAAATACTACAGATTACCAAGTTAATAACAATTACGAACTTCCGAGATCACTATTTGAAACGGAACATCAGTTCTGGAATTCTACTCCTGGCTCTTGCGGGATTGCCATGTATAATGAAAATGGCTTTCATAGGTAA 1074 0.3976 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTMLQGERSNMEEIIAKFAQLSPQERSKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEDLTHQVRVSQAQLAEIQQRLSYWSNLEKINNLEHLRQMEESLRESINRVCIQKENLGKRQLMSLECANQLPEGMTLPLMMTGLQESQPLSWLLSGDNHQLMLPSEPKFLPFSDNGNRDAECSTDISLPGYSGYIGNGKLEVGSSPNVTNLGQGNGNLNELNGNPNPYLNVQHCEQQFAYPPSQDLEDLKHHQTMNSKSNTTDYQVNNNYELPRSLFETEHQFWNSTPGSCGIAMYNENGFHR* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1169 357 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Psa4g1169 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Psa4g1169 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g1169 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g1169 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g1169 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 356 - -
Psa4g1169 357 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Psa4g1169 357 Coils Coil 114 134 - -
Psa4g1169 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Psa4g1169 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 356 - -
Psa4g1169 357 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa4g1169 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1169 Psa-Chr4 83283411 83287807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1169 1 307 Type I MADS-box Gene Family AT2G03060 48.607 3.80e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g1169 SRF-TF 8.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1169 - - pvu:PHAVU_003G189100g 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1169 4 83283411 83287807 Psa4g1169 4 83283411 83287807 ECH