Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1166 ATGGAAACCGGGCGAAACGAAACACCCTTTTTGGTTTTTCGTTTTGTCTCTAAATTTTTATTATGCGCCATTTCTGGAACTCTTACGGCATGTTTTGCCATTGCTGGGGCACTAACAGGAGCTATTGCTGGTGCTTTAGCAGCTAAGGCAACAAAGAGTGGTTTTCTCCGGGGAGTTTCGTTGGGAGCCATTGCCGGGGCTATACTCTCGGTTGAGGTATTGGAAGCTTCCCGTGCGTACTGGTGTATGGAGCAAACTGGTTCACGAGGAACGTCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCGCTTACACCTGCTATTTTAACTGCTTACAATTTGCAATTTGAGCAGGTTGGAATTGCTAATAACACTGGTTATGACGAGATTCATGATGTTCATAGCTTAGTAGCAGCATCCAGAGGATTGCCAGGGGATACATTGAGTAAGCTACCGCACCATACGATCTTGAAGGGCACAAAGGCAGAGAATACTTTGTGTGCAATATGTTTACAGGATATGGAAGTAGGTGAAGTTGCAAGAAGCTTACCTCGTTGTTACCATACGTTTCACTTGATATGTGTGGATAAGTGGCTTCTGAAGAATGATTCATGTCCTATTTGCAGACAGAATGTGTAG 660 0.4394 METGRNETPFLVFRFVSKFLLCAISGTLTACFAIAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGTSSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANNTGYDEIHDVHSLVAASRGLPGDTLSKLPHHTILKGTKAENTLCAICLQDMEVGEVARSLPRCYHTFHLICVDKWLLKNDSCPICRQNV* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1166 219 SMART ring_2 174 215 IPR001841 -
Psa4g1166 219 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Psa4g1166 219 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Psa4g1166 219 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 218 - -
Psa4g1166 219 SUPERFAMILY RING/U-box 154 219 - -
Psa4g1166 219 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 218 IPR044523 -
Psa4g1166 219 Pfam Ring finger domain 174 216 IPR001841 -
Psa4g1166 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 219 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1166 Psa-Chr4 83211087 83213599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1166 16 219 C3H Transcription Factor Family AT1G74410 53.659 1.21e-67 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1166 4 83211087 83213599 Psa4g1166 4 83211087 83213599 ECH