Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1163 ATGGAGACTGAGGAACATGAACTTATTGATTTGAACAGCAACGAGAGTAATTGTGGTGGAAATAATAGCAAGAACGGTGATGGATTCATTGACAGGAGTAAAGTTAGGATTTTGCTTTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTCACTCTTCTTTTGAATTGCTCTTATCAAGTTACATCTGTAAAATCAGCAAGGCAAGTGATTGATGCATTGAACGCAGAAGGGCAATATATAGACATCATACTAGCGGAAGTCGACCTTCCAATAAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAATTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTATCTAGTAAAGCCTTTACGTACTAATGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGTCTTATAGAGAACAACATCGTGAATTATGATTTTGATCTGGTAGCATCAGACCCAAGTGATGCCAATACAAATAGTACCACCTTGTTCTCTGATGACACAGATGAGAGGTCCAAAAGAAGCACTAACCCAGAGCCTGGAATTTCAATCCAACATGAACACGAGGCTATCGTTGCCACCACTGCTGCTGTTATTGAGGAACTTCCATATGCTAATCTATCAGAATATCAGCCCGATGTACCCGGAATTAGTGATCGAAGAACAGGTTCATCAGGACAGCATCCGCCGTGCAACAGAGTTACGGATGGTGGCTTTGATGATTATTCATCAGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTTTCACTTATGTCAAAGCAACAGCAACAGCAACAAAGAGCAACTTTGAAGAGATTGTGCATGTCGAAGATAATAGTACTTCACAAGGAGTGGAAGATATGAATCAAGTGTATTCTCAACAAGGGGGTAATGACCTTCAAAGACATGAAATTGGAGAAATGATTGAAAGCTGTTCCCAGGATGACTTACCCAGAAGCAACAGTATACCTGATTCTTTCTCTATCGAGAGATCGTGTACCCCTGTATCAATGGAGGTTTCACAACAAAATGATCATTACAAGGAAGAACATCCACGGGGGGTGGTTCATCCAAGAAGTGGTAATTATGGTTCTGAGCTCAACCCACCGGGAATGCCATCTCAACATGCTTATCAGTATTATATACCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAACTGTATCAAAATAATATCCAGGATCTTCAGAATCATGCTAGTTCATCTATGATTGCCCAGTACAGTCATCTTCCCCAATGTCCACCTCATGCAACTGGGATGGCACCCTACCCGTATTTTCCAATGAATATTTGCTTACAAACTGGTCAGGTTTCTACAACTCATTCATGGCCATCATTAGGAAGTTCAACTTCAAAGTTGAGCAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGAAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTCAGAAAGTTGAATGGTATCAATGTGGATCTAAATGGACAACCTGCTTCTACTGACTATGATAATGATGATGATGACGAGGAGGAAGAAAACAATGGCGCGAGAGATTCCTCTCCTAAGGATGCTTGA 1743 0.4102 METEEHELIDLNSNESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLIENNIVNYDFDLVASDPSDANTNSTTLFSDDTDERSKRSTNPEPGISIQHEHEAIVATTAAVIEELPYANLSEYQPDVPGISDRRTGSSGQHPPCNRVTDGGFDDYSSGPKKSELRIGESSAFFTYVKATATATKSNFEEIVHVEDNSTSQGVEDMNQVYSQQGGNDLQRHEIGEMIESCSQDDLPRSNSIPDSFSIERSCTPVSMEVSQQNDHYKEEHPRGVVHPRSGNYGSELNPPGMPSQHAYQYYIPGVVNHVMMPSSAQLYQNNIQDLQNHASSSMIAQYSHLPQCPPHATGMAPYPYFPMNICLQTGQVSTTHSWPSLGSSTSKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDDDEEEENNGARDSSPKDA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1163 580 Pfam CCT motif 499 541 IPR010402 GO:0005515
Psa4g1163 580 ProSiteProfiles CCT domain profile. 499 541 IPR010402 GO:0005515
Psa4g1163 580 MobiDBLite consensus disorder prediction 185 211 - -
Psa4g1163 580 MobiDBLite consensus disorder prediction 545 580 - -
Psa4g1163 580 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 564 - -
Psa4g1163 580 MobiDBLite consensus disorder prediction 245 265 - -
Psa4g1163 580 SMART REC_2 35 150 IPR001789 GO:0000160
Psa4g1163 580 SUPERFAMILY CheY-like 31 160 IPR011006 -
Psa4g1163 580 Gene3D - 35 227 - -
Psa4g1163 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 564 IPR045279 GO:0009736
Psa4g1163 580 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Psa4g1163 580 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1163 Psa-Chr4 83108351 83114427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1163 24 579 Response Regulator Gene Family AT5G61380 49.682 1.50e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa4g1163 Response_reg 7.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1163 K12127 - gmx:100786522 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1163 4 83108351 83114427 Psa4g1163 4 83108351 83114427 ECH