Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1161 ATGCGGCAGCGTTCTCATGAATCACCAAACCAGTTCCTGTTGTCACGTCTGCTGTATCATCATTTCCTGCAAGTATCAACAACAGATGAAGTTAACACAACAAATTTTTCCATCAAAACGGATAATGCCACAATTCGTCATAACGTGGATGATCATGAAAATTGGAAGAGGGTGCGGGAAACTGCCCTGCCTATCACAAACCTTTTCTCAGCAAAAGATTGGTACAATTCAATGAAAACAGTGGAAGCAATTAAAGATGCAAACAAGCGTGGGGCACTTCATTTTGCTGCTTTGGAAGGACAAACTGAGATTTGTAAATACCTGTTGGAGGATTTGAAGCTCGAGATTGATTCGAGAGATGATGATGGAGAAACTGATCTCATTCATGCTGCACGACAAGGACACACTGCCACGACTAAGTATCTTATTGACCACGGTGCTGATCCTACTATTGCTAGCAATTTAGGAGCTACGGCATTGCATCATTCTGCTGGAATAGGAGATATTGAGTTGCTTGAGCACTTGCCGTCCAAAGGAATTAATCCTGACTTAGAGAGTGATGCGGGAACACCCTTGGTTTGGGCTGCGGGTCATGCTCAACAAGCTGCAGTTACTGTTCTATTAAAACATGGTGCAAATCCTAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCATCTGTGGCAGCTGGTTCGTTAGAATGCTTGGAGCTGTTAATACAGGTCGGTGCTAAAGTAAATGCATCTAGAACTTCTGGAAAGCTGCATTGA 774 0.4328 MRQRSHESPNQFLLSRLLYHHFLQVSTTDEVNTTNFSIKTDNATIRHNVDDHENWKRVRETALPITNLFSAKDWYNSMKTVEAIKDANKRGALHFAALEGQTEICKYLLEDLKLEIDSRDDDGETDLIHAARQGHTATTKYLIDHGADPTIASNLGATALHHSAGIGDIELLEHLPSKGINPDLESDAGTPLVWAAGHAQQAAVTVLLKHGANPNAETDDGITPLLSSVAAGSLECLELLIQVGAKVNASRTSGKLH* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1161 257 Gene3D - 58 160 IPR036770 -
Psa4g1161 257 SUPERFAMILY Ankyrin repeat 86 254 IPR036770 -
Psa4g1161 257 ProSiteProfiles Ankyrin repeat region circular profile. 220 249 - -
Psa4g1161 257 SMART ANK_2a 187 216 IPR002110 GO:0005515
Psa4g1161 257 SMART ANK_2a 88 118 IPR002110 GO:0005515
Psa4g1161 257 SMART ANK_2a 122 151 IPR002110 GO:0005515
Psa4g1161 257 SMART ANK_2a 155 184 IPR002110 GO:0005515
Psa4g1161 257 SMART ANK_2a 220 249 IPR002110 GO:0005515
Psa4g1161 257 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Psa4g1161 257 Gene3D - 161 256 IPR036770 -
Psa4g1161 257 ProSiteProfiles Ankyrin repeat region circular profile. 122 148 - -
Psa4g1161 257 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Psa4g1161 257 PANTHER BNAC03G33870D PROTEIN 79 249 - -
Psa4g1161 257 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Psa4g1161 257 Pfam Ankyrin repeats (3 copies) 86 151 IPR002110 GO:0005515
Psa4g1161 257 Pfam Ankyrin repeats (3 copies) 160 249 IPR002110 GO:0005515
Psa4g1161 257 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 79 249 - -
Psa4g1161 257 ProSiteProfiles Ankyrin repeat profile. 122 154 IPR002110 GO:0005515
Psa4g1161 257 PRINTS Ankyrin repeat signature 156 171 IPR002110 GO:0005515
Psa4g1161 257 PRINTS Ankyrin repeat signature 203 217 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1161 Psa-Chr4 83062143 83062916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1161 130 247 Ion Channels AT5G37500 29.661 5.71e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1161 - - gmx:100793914 298.516