Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1144 ATGTCAGACTCGCAGGAAACACATTCCTCTTCCTATCTATTTTTACTCTTTTCCTTCGTCCTTCTTTCAGGTAGTCTTGTTGTTGGAGATTCTTTAGACACAGACAAACAGATTCTGTTGAGGTTGAAAAAGTATCTAGACAATAAAACTCTTGCAGACCGAGGAAAGTACATATACTGGAACAATGATAGTTCTGATTCTAGTCCATGTGAATGGAAAGGGATTTTGTGTAACAACGCCAAGAGGGTGATTTCGATTGATCTGTCTTACAGTGACATCACTGGAGAGATATTTCAAAGCTTTTCCGAGCTGACTGAGTTAACACATCTTGACCTCTCGCAGAATACGCTCTTTGGAAATTTTCCAGATGATTTGAGAAACTGTCGCAAACTGTTGCATCTCAATCTCTCTCATAATATTCTTGAGGGAGAATTGAATGTTTCTGGATTGACGACTTTGGAGACACTTGATTTGTCTTTGAATAGATTTCATGGAGAAATTGGGCTATTGGATTTTCCTTCCGTTTGTGGAAATTTAGTGACTTTGAATGTGTCGGGAAATAACTTAACCGGTGAGATTGGTGATACTTTTGATCAGTGTTTGAATTTGAAGTACTTGGATTTGAGTACTAATAAGCTGAGTGGAGGTTTATGGAATGGATTTGCAAGGCTGAAGCAGTTTTCTGTTGCTGAGAATCTTCTCAATGGAAATGTTTCGTCCGAAGCTTTTCCGTTGAATTGTGAGCTTGTGGAATTAGACCTTTCTCAGAATAGTTTTTTTGGGGAGGCACCAAAGGAAATTTCTAACTGCAAGAATTTAACCATGTTGAATCTTTCGACCAACAATTTTACTGGAGCTATCCCTATTGAAATTGGGTCCATTTCACTGCTTAAAGGATTGTACTTGGGAGGAAACAACTTTTCAAGAGATATTCCTGAGACCCTTTTGAAATTGAGTAACTTGGTTTTCTTGGATTTGAGCCGAAACAATTTTGGTGGTGACATACAAAAGATATTTGGAAATTTTAAGCAGGTTAGGTTTCTTCTGTTACACTCCAACTCTTACACCGGAGGATTGTTATCATCTGGAATTGTCACATTGCCGAATATTACACGGTTAGACCTTAGCTTCAACAAGTTTTCAGGTCTATTACCCGTTGAAATCTCTCATATGCAAAGTCTAGAACTTTTAATGTTATCGTATAACCAATTCAATGGAACTATTCCATCAGAATTTGGAAATATGCATAATTTACAAGCTCTTGATCTTGCTTTCAACCAGTTGAGTGGACCGATTCCTCCAAGCCTTGGAAACTTGAGATCACTCTTGTGGTTGATGCTTGCAGACAATTCGTTAAACGGAACAATCCCTTCGGAGTTAGGGAACTGTACTAGTTTGTTATGGTTAAACCTTGCTAACAATAACCTCACTGGAAAGTTTCCTCAGGAGCTTTCCAAAATCGGAAAGAATGCGATGGAAACATTTGAATTGAATAGGAGAAAAGACGGAATAGTTGCTGGTTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGACATTTTAACCAGAAAAAATTGTAGAGGACTTTGGAATAAATTGCTAAAAGGGTATGGAATTTTCCCATTTTGCACACCAGGGTCCTCTCTCAGGTTACCTTTGATATCTGGTTATGTTCAGTTAAGTGGAAACAAACTAAGTGGTGAAATTCCTTCAGAGATTGGAACTATGGTGAATTTCAGTTTGTTGCATTTGGGATTCAACAGTTTCTCTGGAAAACTTCCACCAGAGTTGGGAGACATTCCACTTGTGGTCTTGAACTTGACTACAAACAATTTTTCAGGTGAAATTCCTACTGAAATTGGAAACTTTATTTGCTTGCAAAATCTTGATTTGTCTCGAAACAACTTCTCGGGGAATTTTCCATCAAGTTTGAACAAAGTGGCTGAGCTTAACAAGTTCAACATCTCATACAATCCCTTCATACAAGGTGTGGTTTCATCAAGTGGACAATTTGTTACTTTTGGTAAAGATTCATATTTTGGTGACCCTCTTTTGATCCTTCCCCAGTTCATCGATAATAGTACCACGAGAAACGATAAGAACATGACTCACAACAAAGACCATAAAAAGCCTACAAAATTGACTGTGTTTTTGGTGTTTTTAACCATAACACTTGTTTTTATCATATTTAGTTTTCTGACAATAATTGTCTGTGCATTAGTCAAATCCCCATCAGATCAATATCTCTTGAGGGATCATACAAAACACTGCAATGACTCAAGCAGTTCAGGAATAGAATCTCCACAATGGTTATCTGATTCGGTAAAAGTGATTCGATTAAACAAGACAGCTTTCACCTATGCAGACATTTTGAAAGCAACAAACACTTTCTCAGAAAGCAGAATCATAGGAAGAGGTGGATTTGGAACAGTATACAAAGGATTTTTCGCAGACGGTAGACAAGTAGCAGTGAAGAAGCTTCTAAGCGAAGGACGCGAAGGCGAAAAGGAATTCCAAGCTGAAATGGAAGTTCTAAGCGGTCATGGTTTCGGTTGGCCTCATCCGAATCTCGTCACACTCTACGGTTGGTGTCTAAACAATTCAGAAAAGATACTTGTTTACGAGTACATAGAAGGCGGAAGCTTAGAAGATCTAGTAACCGATAAAACAGGTTTGACACGGAAGAAAAGACTACAAATAGCCATCGACGTAGCTCGCGCGCTTGTCTATTTGCACCACGAATGCGACCCTTCAATTGTTCATAGAGATGTGAAGGCTAGTAATGTGTTGCTTGACAAAGAAGGTAAAGCAAAAGTAACCGATTTTGGACTAGCTAGAGTTGTTAATGTTGGTGATAGTCATGTGAGTACAATGGTAGCCGGAACTGTTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTACTACAAAAGGTGATGTTTATAGTTATGGTGTGTTGGTTATGGAATTGGCTACAGGTAGAAAAGCAGTGGATGGAGGTGAAGAATGTTTGGTCGAATGGACGAGGCGTGTTATGATGGGAAGAAAACAACAACAATATCATCATGTTTTGAGTTATTTGGGTTCAGAAGAAATGGTTGAATTGCTATGTATTGGTTTGAAGTGTACAAATGAGACACCAAATGGTAGGCCAAATATGAAACAAGTTTTGGCTATGCTTATTTTGATATCTAAATCCAATGTTGGAGATTCAAGTGATCTTGGACACATTGTTTAG 3276 0.3834 MSDSQETHSSSYLFLLFSFVLLSGSLVVGDSLDTDKQILLRLKKYLDNKTLADRGKYIYWNNDSSDSSPCEWKGILCNNAKRVISIDLSYSDITGEIFQSFSELTELTHLDLSQNTLFGNFPDDLRNCRKLLHLNLSHNILEGELNVSGLTTLETLDLSLNRFHGEIGLLDFPSVCGNLVTLNVSGNNLTGEIGDTFDQCLNLKYLDLSTNKLSGGLWNGFARLKQFSVAENLLNGNVSSEAFPLNCELVELDLSQNSFFGEAPKEISNCKNLTMLNLSTNNFTGAIPIEIGSISLLKGLYLGGNNFSRDIPETLLKLSNLVFLDLSRNNFGGDIQKIFGNFKQVRFLLLHSNSYTGGLLSSGIVTLPNITRLDLSFNKFSGLLPVEISHMQSLELLMLSYNQFNGTIPSEFGNMHNLQALDLAFNQLSGPIPPSLGNLRSLLWLMLADNSLNGTIPSELGNCTSLLWLNLANNNLTGKFPQELSKIGKNAMETFELNRRKDGIVAGSGECLAMKRWIPADYPPFSFVYDILTRKNCRGLWNKLLKGYGIFPFCTPGSSLRLPLISGYVQLSGNKLSGEIPSEIGTMVNFSLLHLGFNSFSGKLPPELGDIPLVVLNLTTNNFSGEIPTEIGNFICLQNLDLSRNNFSGNFPSSLNKVAELNKFNISYNPFIQGVVSSSGQFVTFGKDSYFGDPLLILPQFIDNSTTRNDKNMTHNKDHKKPTKLTVFLVFLTITLVFIIFSFLTIIVCALVKSPSDQYLLRDHTKHCNDSSSSGIESPQWLSDSVKVIRLNKTAFTYADILKATNTFSESRIIGRGGFGTVYKGFFADGRQVAVKKLLSEGREGEKEFQAEMEVLSGHGFGWPHPNLVTLYGWCLNNSEKILVYEYIEGGSLEDLVTDKTGLTRKKRLQIAIDVARALVYLHHECDPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVNVGDSHVSTMVAGTVGYVAPEYGQTMKATTKGDVYSYGVLVMELATGRKAVDGGEECLVEWTRRVMMGRKQQQYHHVLSYLGSEEMVELLCIGLKCTNETPNGRPNMKQVLAMLILISKSNVGDSSDLGHIV* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1144 1091 Pfam Leucine rich repeat 368 428 IPR001611 GO:0005515
Psa4g1144 1091 ProSiteProfiles Protein kinase domain profile. 808 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1144 1091 Gene3D Transferase(Phosphotransferase) domain 1 888 1086 - -
Psa4g1144 1091 SMART serkin_6 808 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1144 1091 SMART LRR_typ_2 391 414 IPR003591 -
Psa4g1144 1091 SMART LRR_typ_2 104 128 IPR003591 -
Psa4g1144 1091 SMART LRR_typ_2 439 463 IPR003591 -
Psa4g1144 1091 SMART LRR_typ_2 318 341 IPR003591 -
Psa4g1144 1091 SMART LRR_typ_2 415 438 IPR003591 -
Psa4g1144 1091 SMART LRR_typ_2 367 390 IPR003591 -
Psa4g1144 1091 Gene3D Ribonuclease Inhibitor 31 171 IPR032675 -
Psa4g1144 1091 SUPERFAMILY L domain-like 173 481 - -
Psa4g1144 1091 Gene3D Ribonuclease Inhibitor 558 714 IPR032675 -
Psa4g1144 1091 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524
Psa4g1144 1091 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 1078 - -
Psa4g1144 1091 SUPERFAMILY Protein kinase-like (PK-like) 790 1075 IPR011009 -
Psa4g1144 1091 SUPERFAMILY L domain-like 570 673 - -
Psa4g1144 1091 CDD STKc_IRAK 814 1076 - -
Psa4g1144 1091 Gene3D Ribonuclease Inhibitor 248 499 IPR032675 -
Psa4g1144 1091 Pfam Protein kinase domain 809 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1144 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Psa4g1144 1091 Gene3D Ribonuclease Inhibitor 172 246 IPR032675 -
Psa4g1144 1091 Gene3D Phosphorylase Kinase; domain 1 772 887 - -
Psa4g1144 1091 Pfam Leucine Rich repeat 151 166 IPR001611 GO:0005515
Psa4g1144 1091 Pfam Leucine Rich repeat 178 194 IPR001611 GO:0005515
Psa4g1144 1091 Pfam Leucine rich repeat N-terminal domain 33 78 IPR013210 -
Psa4g1144 1091 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1078 - -
Psa4g1144 1091 SUPERFAMILY L domain-like 46 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1144 Psa-Chr4 82302501 82306395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1144 50 1084 Receptor kinase-like Gene Family AT4G39400 33.187 4.10e-148 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Psa4g1144 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1144 - - gmx:100816573 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1144 4 82302501 82306395 Psa4g1144 4 82302501 82306395 ECH