Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1140 ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCCGTGGACCACTCTGTGGACTCGGAGAGGAATAGTAGTATTACTAACAAGAACAAGAAGAAGAAGAAAGATAGTGGTGAGTCAGTTGGACTGAGTTGGAGCGAGGTGGGTGAGTCAGGGAGAACGAGTTTGAATGGTGGAAATGAGTCTCTGAGTTTCAGGTTAGGGAATCTTAGTAAGTATGTGGAGGGAGAACAAGCCGCCGCCGGATGGCCGGCTTGGCTTAGCGCGGTTGCTTCGGAAGCTATTCATGGTTGGGTGCCTCTCCGTTCTGATGCATTTGAAAAGCTTGACAAGATTGGGCAGGGAACGTATAGTAGTGTTTTTCGAGCCAAGGAGATTGAGACGGGGAAGATAGTGGCGTTAAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTCAGGTTTATGGCAAGAGAAATTATGATTCTTAGAAGACTTGATCATCCCAACATCATTAAACTGGAGAGTTTGATTACTTCAAGGTTGTCTTGTAGCATCTACCTTGTATTCGAGTACATGGAGCATGATGTCACAGGGCTCTTGTCAAAACCGGAAATCAACTTTACTGAATCACAGATTAAATGCTACATGAAACAGTTGTTATCTGGTTTAGAGCACTGTCACTCGAGGGGTGTAATGCACCGGGACATCAAAGGATCGAATCTTCTGGTGAATAACGAAGGGATATTAAAGGTAGCGGATTTTGGATTGGCGAATTTCTGTAATTCCGGGAGCAAACAGCCGCTCACCAGCCGAGTTGTCACATTATGGTATCGTCCTCCAGAGCTTTTGCTTGGTTCAACAGACTACGGTCCGTCTGTGGATATTTGGAGTGTTGGTTGTGTATTTGGAGAGTTTCTAGTTGGGAAGCCGATACTTAAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCTCCGCCGGATGAATACTGGAAAAGGACCAAACTACCTCACGTGACTTTGTTCAAGCCACAGCAACCATATGATAGTTGCCTAAGAGAAACATTTAGAGATTTTCCTGCAAGCAGTGTAAATTTGTTACAAAATCTTCTTTCTATAGAACCAAACAAACGCGGAACCGCCTCATCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCGTCAAGCTTACCAGTATACCCGCCTAGCAAAGAGATCGATGCAAAACACGACGAGGAAACAAAAAGGAAAAAGATTGCTGGGCGAGTTTGTGGACCTGAAAAAAGAAGATCATCGAGAAAGCCAGTAGGACTGAGTAAATTACCACTACCAGAGGATTTGACAAGGCAAACTCAAACTTCACAAAAGACAGATGATAGATCTGTTCGCATCCTTAAAGAAGACAACACTAACATAGGCGACGAGGCATCAAAGCGATCCGGTGGTAAACCAGAAGATGCTTCCGATATGAAAAATGCATCTCAAGTTGATATTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCGAAAAGGCGTAAAGACGACACCACTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAATTCATTAGAAACTTGTACACAAAACTCAAGGAATATTTGTGATGATAATGAAAACAATGAAAATAAGGAAGGTTTTGGAGGACGAACCAGCTCCAGAGGCCATGACGTATTTGAAATTTCTAAGTTAGTTGTGCAAAACCAATGGAGTAAGTTTGATCGCCCGGATTCATTTGATACTTGTGAAGAGTACCACTCGCAAGAACTGTCGATGATGGTTTATCATAGAGAAGATTCCCTCTCGAAGAGAAGTAATCGGAGTTATCAGGATCAAGGAGAGAAGGTTGAATTTTCAGGGCCACTAATATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAGACATGAACGCCACATTCGGCATACAGTCCGAAGATCATGGTTTCAGAGAGGTAAGAAGCGTGGGAATTAA 2046 0.4286 MGCVFVKQGVSVTPAVDHSVDSERNSSITNKNKKKKKDSGESVGLSWSEVGESGRTSLNGGNESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLESLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGSKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFGEFLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKRTKLPHVTLFKPQQPYDSCLRETFRDFPASSVNLLQNLLSIEPNKRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDAKHDEETKRKKIAGRVCGPEKRRSSRKPVGLSKLPLPEDLTRQTQTSQKTDDRSVRILKEDNTNIGDEASKRSGGKPEDASDMKNASQVDIPFHGPLQVSKSSGFAWAKRRKDDTTSIRSHTRSISKGHIFNSLETCTQNSRNICDDNENNENKEGFGGRTSSRGHDVFEISKLVVQNQWSKFDRPDSFDTCEEYHSQELSMMVYHREDSLSKRSNRSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHTVRRSWFQRGKKRGN* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1140 681 Gene3D Transferase(Phosphotransferase) domain 1 191 432 - -
Psa4g1140 681 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
Psa4g1140 681 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1140 681 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 38 674 - -
Psa4g1140 681 MobiDBLite consensus disorder prediction 17 46 - -
Psa4g1140 681 SUPERFAMILY Protein kinase-like (PK-like) 102 399 IPR011009 -
Psa4g1140 681 CDD STKc_CDK9_like 108 392 - -
Psa4g1140 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Psa4g1140 681 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Psa4g1140 681 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1140 681 MobiDBLite consensus disorder prediction 411 498 - -
Psa4g1140 681 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g1140 681 PANTHER CELL DIVISION PROTEIN KINASE 38 674 - -
Psa4g1140 681 MobiDBLite consensus disorder prediction 466 493 - -
Psa4g1140 681 MobiDBLite consensus disorder prediction 411 441 - -
Psa4g1140 681 MobiDBLite consensus disorder prediction 27 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1140 Psa-Chr4 82171716 82176393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1140 100 424 Core Cell Cycle Gene Families AT5G10270 51.320 4.86e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa4g1140 Pkinase 3.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1140 - - gmx:100816047 1115.52