Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g1131 | ATGGAAAAATACCAACCTCAAGAACTCAAACACGCTTGCAAATTCTGCAACAAAAGCTTCCCTTGTGGTAGATCCTTAGGAGGTCACATGAGGTCTCACATAAACAACTCATCACCATCATCTGAAAAAACAGAACAAAAAACAGAACAGAAACAGAAGCTTGATTCAATCAACAACGGTTGCATTGGTTCCGAAACTAATGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAAACATGGAGAAAGAGAATTGCAGATTCAAGTGAAGAGGGTTTGGTCTATGACAAGTTCTGCAAAGAGTGTGGAAAATATGTTAGTCCTTGGAGTGGTCTTGCTGAATCTTCCGATAACAATTCAGTTTACACCGAACATCGATCTTCGGTTCGAACTAATCTTGTTACTAAATTCAATGCCAACAACAAGAATCTCACTACTACTACTGCTAGTGCTAGTGCTAGTGCTAGTACTATGAATGTTGCCAAGTTGATGAAGCAAAAGAATTTTTACTACAAAGGAAAAAGTTCAGAATTTTTGGATACTGAAGAAGGATTCAAGATCAAGGGGTTCATCAAATCTACAAAACTCGAGCTTGATTATGTATCAACTATGGACGATTCAGAAGCTGAAAATGGAAAAAACATAGTCAATGGAACAGAATCGGTTACTATGGGAAAGTTTGAGTGTACTACTTGCAACAAAATCTTTCATTCATATCAAGCTCTTGGAGGTCATAGAGCAAGTCATAAAAAGAACAAAGGTTGTTTCGCTTCAAAGATTGATGATGACAACAACATTGAAAACAGCGTTGAGTTCGAAAATGATCTGTTTCATGAACCAGCAACCGAAAGCAAGATCATGAAGATTATTCATAGTCATAAAAACAATGAACATATTCAAAACATGAAGATCAAAGGTCATCATGAGTGTCCAATTTGCTTCAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAGAGATCTCATATGGTTGCTTCTTCTGGTGGTGGCTCTGAGAGTAGAGTTCCACAGATTAGGGATTTTCTTGATCTTAATCTTCCTGCTGCTGCTACTGAAGAAGGAAGTAGTAGTCATGCTGATTCTAACAGGCCTTGGTGGATAGTTGAAAGTAACCATAAGCAAGAGGCACTTGTAGGGTAG | 1161 | 0.379 | MEKYQPQELKHACKFCNKSFPCGRSLGGHMRSHINNSSPSSEKTEQKTEQKQKLDSINNGCIGSETNGSYGLRENPKKTWRKRIADSSEEGLVYDKFCKECGKYVSPWSGLAESSDNNSVYTEHRSSVRTNLVTKFNANNKNLTTTTASASASASTMNVAKLMKQKNFYYKGKSSEFLDTEEGFKIKGFIKSTKLELDYVSTMDDSEAENGKNIVNGTESVTMGKFECTTCNKIFHSYQALGGHRASHKKNKGCFASKIDDDNNIENSVEFENDLFHEPATESKIMKIIHSHKNNEHIQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVASSGGGSESRVPQIRDFLDLNLPAAATEEGSSSHADSNRPWWIVESNHKQEALVG* | 387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g1131 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 307 | 329 | IPR013087 | - | |
| Psa4g1131 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 252 | IPR036236 | - | |
| Psa4g1131 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 8 | 36 | IPR036236 | - | |
| Psa4g1131 | 386 | Pfam | C2H2-type zinc finger | 306 | 330 | - | - | |
| Psa4g1131 | 386 | Pfam | C2H2-type zinc finger | 226 | 250 | - | - | |
| Psa4g1131 | 386 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Psa4g1131 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 253 | IPR013087 | - | |
| Psa4g1131 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 309 | 329 | IPR013087 | - | |
| Psa4g1131 | 386 | SMART | c2h2final6 | 226 | 248 | IPR013087 | - | |
| Psa4g1131 | 386 | SMART | c2h2final6 | 307 | 329 | IPR013087 | - | |
| Psa4g1131 | 386 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Psa4g1131 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 38 | IPR013087 | - | |
| Psa4g1131 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 248 | IPR013087 | - | |
| Psa4g1131 | 386 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 111 | 386 | - | - | |
| Psa4g1131 | 386 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 110 | - | - | |
| Psa4g1131 | 386 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
| Psa4g1131 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Psa4g1131 | 386 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 111 | 386 | - | - | |
| Psa4g1131 | 386 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g1131 | Psa-Chr4 | 81585539 | 81586978 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g1131 | 220 | 363 | C2H2 Transcription Factor Family | AT2G45120 | 41.176 | 1.25e-26 | 106 |
Transcription factors information