Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1117 ATGGCGAAAACTGTCACCCCAAACGCCATTTCTACCTTGCAGGCAAATCCGTGTCCTGATTCTTCATCAGATCTGCCTGATATCGTTCTTCAAGTTCTCGATCTCAAACACAGTGGAAACAGATACATGTTCTCTGCTAGTGATGGAAAGATGAAACTGAAGGCAATTTTTCCATCGAACCAGTCCTCAGAGGTGCTCTCTGGGAAGATTCAGAACCTTGGACTTATCCGAATCCTTGAATATACTCTCAATGATATCCCTAATAAATCCGAGAAGTATCTATTTGTAATTAAGTGTGAAGCTGTTTCTCCTGCGCTTGAATCGGAGATTAAAAGTGAACAACCCGGTATCACTTTGAAGCCAAAGGAAGGATCTGGTATAGATTTAAAGCCGAAGCAGAGCGTTGTTTCAAAATCTGCTGCTCAGATCGTTCATGAGCAACATGGAAATTCGGCTCCTGCTGCAAGAATGGCTATGACCCGTAGAGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTAGTTGGACAATCAAGGTCAGTGTTACAAGCAAAGGTGCCTTGCGTACGTATAGGAATGCTAGAGGAGAAGGATGTGTATTCAATGTTGAATTAACTGATGAAGATGGTACACAGATTCAAGCAACGATGTTTAATGATGCGGCAAGGAAGTTTTATGAGAAGTTTGTAATGGGAAAGGTTTATTACGTTTCAAAAGGATCTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACACTGAATGAAAATTCTGAGGTGGAAGAGGTTGCCAGTGAAGCAAGTTTTGTTCCAGAGACAAAATTCAATTTTGTCCCAATTGATCAGTTGGGTCCTCACGTCAATAAGTCTGATCTTGTTGATGTTGTTGGAATTGTTAAGAATGTGTCTTCAACTATGAGCATTCGAAGGAAGAGCAACAATGAGACTGTTCCCAAGCGTGACATTACTATTGCGGATGAAAGCAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGATCTTGCAACCAACATAGGTCAAGAGTTATTGGACATTGCTGATAAATCTCCAGTGGTTGCAATCAAATCTGTGAAGGTTGGAGATTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTGGTCCTGATTGATCCAGAGGTACCTGAAGCTCAGAAGCTCAGATGCTGGTATGACTCTGAAGGCAAGGATACTGCAATGGCTGCTTTAAGCGCTGGCTCAATTAATTCCAATGCTGGTAGATCAGTGTACTCTGACCGTGTTCTGCTCTCTCACATAACCTCCAACCCCTCCTTGGGGGCTGAGAAGCCTGCTTTCTTTAGTATCAGAGTATGCATAAATTCCATAAAGCCAGACCAGGCAATGTGGTATCGTGCTTGTAAGACTTGCAATAAGAAAGTTACTGAGAGCATTGATGCTGGATATTGGTGTGAAAGTTGCCAGAAAAATGATCAAGAGTGCAACTTACGATATATTATGATTGCTAGAGTTACTGATAAAAGTGGCGAGACATATATATCAGCCTTTAATGAAGAAGCTGAGAGGCTCATTGGGTGCTCTGCTGATGAGCTAGGCAATCTTAGATCACAGGAGGGAGAAGAAAATCCTTATCAGACTAAATTGAAGCGGGCTGCATGGAAATCACACCTCTTACGAGTTAGTGTTTCTCAGAATGAGTATAACAATGAGAAGAGGCAAAGGATAACAGTACGGGCAGTTGTCCCTGTTGATGACTTTGCTGCTGAGTCAAAAATTCTTCTTGAAGACATATCAAAGATGGTAGCGGCTCATTAA 1830 0.4142 MAKTVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMFSASDGKMKLKAIFPSNQSSEVLSGKIQNLGLIRILEYTLNDIPNKSEKYLFVIKCEAVSPALESEIKSEQPGITLKPKEGSGIDLKPKQSVVSKSAAQIVHEQHGNSAPAARMAMTRRVRPLVSLNPYMGSWTIKVSVTSKGALRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYEKFVMGKVYYVSKGSLKVANKQFKTVQNDYEMTLNENSEVEEVASEASFVPETKFNFVPIDQLGPHVNKSDLVDVVGIVKNVSSTMSIRRKSNNETVPKRDITIADESKKTVVVSLWGDLATNIGQELLDIADKSPVVAIKSVKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRCWYDSEGKDTAMAALSAGSINSNAGRSVYSDRVLLSHITSNPSLGAEKPAFFSIRVCINSIKPDQAMWYRACKTCNKKVTESIDAGYWCESCQKNDQECNLRYIMIARVTDKSGETYISAFNEEAERLIGCSADELGNLRSQEGEENPYQTKLKRAAWKSHLLRVSVSQNEYNNEKRQRITVRAVVPVDDFAAESKILLEDISKMVAAH* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1117 609 Pfam Replication factor-A C terminal domain 451 596 IPR013955 -
Psa4g1117 609 Gene3D - 4 115 IPR012340 -
Psa4g1117 609 SUPERFAMILY Nucleic acid-binding proteins 164 271 IPR012340 -
Psa4g1117 609 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Psa4g1117 609 SUPERFAMILY Nucleic acid-binding proteins 281 408 IPR012340 -
Psa4g1117 609 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 603 - -
Psa4g1117 609 CDD RPA1_DBD_A 165 268 - -
Psa4g1117 609 Pfam Replication protein A OB domain 292 389 IPR031657 -
Psa4g1117 609 CDD RPA1_DBD_C 434 604 IPR013955 -
Psa4g1117 609 CDD RPA1_DBD_B 298 404 - -
Psa4g1117 609 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 10 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa4g1117 609 PANTHER REPLICATION FACTOR A 1, RFA1 5 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa4g1117 609 SUPERFAMILY Nucleic acid-binding proteins 430 605 IPR012340 -
Psa4g1117 609 Gene3D - 276 415 IPR012340 -
Psa4g1117 609 Gene3D - 416 605 IPR012340 -
Psa4g1117 609 Pfam OB-fold nucleic acid binding domain 177 262 IPR004365 GO:0003676
Psa4g1117 609 SUPERFAMILY Nucleic acid-binding proteins 1 105 IPR012340 -
Psa4g1117 609 Gene3D - 162 271 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1117 Psa-Chr4 80804270 80807801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1117 1 604 Core DNA Replication Machinery Family AT5G08020 69.687 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1117 K07466 - gmx:100777091 908.286