Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1097 ATGGCTTTCTTTGGCAAACTTGGGAGTATTCTACGACAAGCTACAAACAGGAAGATTATTTCAGAATTGCGTCCTTCTCCATCTGCTTTCCAGGCTATAAGATGCATGTGTTCTGCTCCAACCACAAAGCTATTTATAGGGGGTATTTCGTATTCAACTGATGAGCCAAGTTTGAGGGAGGCTTTTTCAAGATACGGCGAAGTACTGGATGCTAGGGTGATTATGGATCGTGAAACTGGTAGGTCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGTCGAGTTAGGGTAAATTATGCTAATGAAAGGCCTCGTGTTTATGGTGGTGGCGGTGGTTCTTATGGCAATGCACCATATGGTGGTGGAGCTGGGTATGCAGGTGGTGGTGGGGGCTATGGTGGAGCTGGGTATGCAGGTGGTGGTGGTGGCTATGGTGGAGGTTACGGTGGTGGTGGATATGGTGGAGGCAGCTCTGGGCCAGGTGGGAATTATGGTGGCAGTGATGCTGGCAATAACTATTCTGCTCCCAGTGGAAGTGGGACGAGTTATGGGAATGATGGCAGCGGTGGTTTTCCGGCTGACTTTGGTGGTGCAGGTAGTGGCACTAGCTCTGCTGGTGGATATGATGGAAGTGGGGGGTTAGGATATGGCAGCAGTAGTTTTCCCGCTGACGTTGATGGTGCAGGCAGTGGCACTGGCTCTGCTGGTGGACACTTTGATAGCAAAGACAGTGGAGATGTAAATGAGGATTTGGGAAATTTTAGGGATGACAATGATGATGACACTGATAATTTTGCCAAAAGGGCTTGA 864 0.4884 MAFFGKLGSILRQATNRKIISELRPSPSAFQAIRCMCSAPTTKLFIGGISYSTDEPSLREAFSRYGEVLDARVIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPRVYGGGGGSYGNAPYGGGAGYAGGGGGYGGAGYAGGGGGYGGGYGGGGYGGGSSGPGGNYGGSDAGNNYSAPSGSGTSYGNDGSGGFPADFGGAGSGTSSAGGYDGSGGLGYGSSSFPADVDGAGSGTGSAGGHFDSKDSGDVNEDLGNFRDDNDDDTDNFAKRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1097 287 CDD RRM_HP0827_like 43 119 - -
Psa4g1097 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Psa4g1097 287 PRINTS Eggshell protein signature 38 54 - -
Psa4g1097 287 PRINTS Eggshell protein signature 138 153 - -
Psa4g1097 287 PRINTS Eggshell protein signature 166 176 - -
Psa4g1097 287 PRINTS Eggshell protein signature 217 235 - -
Psa4g1097 287 SMART rrm1_1 43 116 IPR000504 GO:0003723
Psa4g1097 287 MobiDBLite consensus disorder prediction 243 287 - -
Psa4g1097 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Psa4g1097 287 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 286 - -
Psa4g1097 287 Gene3D - 13 137 IPR012677 -
Psa4g1097 287 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 286 - -
Psa4g1097 287 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Psa4g1097 287 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1097 Psa-Chr4 80154266 80157509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1097 42 131 Eukaryotic Initiation Factors Gene Family AT4G34110 34.444 2.21e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1097 K12741 - gmx:100782808 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1097 4 80154266 80157509 Psa4g1097 4 80154266 80157509 ECH