Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1092 ATGGCCGAACCAGAAAACACCTTTCAAGCTTCACATAAGAAGAAGAAGCGCGACAAAAAGAGGCTCCGTGATATTGTTGAGGAGCAAAACGGAGCAGAAGAAGAAGATGTGAATGATACTCGTAGTAATGGAGAATCCTCGAAAAAGATGAAGAAGGAGAAAGAGGAGGTGGAAGTAGAAAATGAAGTAGTGGAAGAGAAAAAGGTTAAGGATAATAGTGGTTCTGGAATTATGAGCACCGAGTCATTTGCTTCTCTCGGATTATCTGTACCTACTTCTAAAGCCATTACGGATATAGGATTTCAACGCATGACTCAGATTCAAGCAGGATCGATTCCGCCACTTTTGACTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGTAAAACTCTTGCTTTTTTAATTCCTGCCGTGGAGCTTTTGTACAAGCTTAAGTTTAATCCTCGAAGTGGAGCTGGTGTTGTTGTCATATGTCCCACCAGAGAGCTTGCTATTCAGACCCATGATGTTGCCGAGAAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAACAACTTGCTAAAGGGATAAATATATTGGTAGCTACTCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGCGGTTCATATATGCTAACCTGAAGTGCCTCATTATTGATGAAGCTGACAGGCTATTGGAAGCAAACTTTGAGGATGAATTGAAGCAGATTATCAAGCTCCTCCCAAAGAGTAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAAACGACTCCTGTCTATATTGATGTAGATGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTACAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTAGTGTTCTCTATTCCTTCTTGAAGAGGCACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCCGACATTTTCAATCACATTAATCTGCATTGTGCAAATATTCATGGAAAACAAAAGCAGCAGACCCGGACAGCTGCTTTCAGAGACTTCTGCGAAGCAGAAAATGGGGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGTTTGGACATACCTTCCGTGGACTGGATTGTGCAGTATGATCCGCCTGATGAGCCAAAGGAATATATTCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGCAATGCCTTGCTTTTTCTGATTCCTGAAGAATTGCAGTTTCTTCGCTATCTAAAGATAGCTAAGGTCCCTGTGAAAGAATATGCTTATGATGAAAAGAAGGTGGCTAATATACAGTCTCACCTGGAGAGTTTGGTTGCTGGAAATTATTTTTTGAATAAAATGGCTAAGGAAGCATATAGATCATACATATTAGCATATGATTCACATTCCTCGAAGGATATATTCAATGTTCAACACCTCGATCTGCAGGCTGTTGCAGCTTCATTCTGTTTTTCAAACCCTCCAAATGTGAGTGTAAACATAAGCAGCAGTAAGCAAAGGAAGAAAACACGTAGAGTTGATGGTGGCAGACATGGATTCAACCCCAACAATCCTTATGGAAAGCGAAATGCTGATGATGTGCGGCAGTTTGTGAGGCATTAA 1701 0.415 MAEPENTFQASHKKKKRDKKRLRDIVEEQNGAEEEDVNDTRSNGESSKKMKKEKEEVEVENEVVEEKKVKDNSGSGIMSTESFASLGLSVPTSKAITDIGFQRMTQIQAGSIPPLLTGKDVLGAARTGSGKTLAFLIPAVELLYKLKFNPRSGAGVVVICPTRELAIQTHDVAEKLLKYHSQTLGLIIGGSARRTEAEQLAKGINILVATPGRLLDHLQNTKRFIYANLKCLIIDEADRLLEANFEDELKQIIKLLPKSRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRKKVTNEGLLQGYVVVPCAKRFSVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHINLHCANIHGKQKQQTRTAAFRDFCEAENGVLLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKIAKVPVKEYAYDEKKVANIQSHLESLVAGNYFLNKMAKEAYRSYILAYDSHSSKDIFNVQHLDLQAVAASFCFSNPPNVSVNISSSKQRKKTRRVDGGRHGFNPNNPYGKRNADDVRQFVRH* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1092 566 Gene3D - 302 539 IPR027417 -
Psa4g1092 566 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Psa4g1092 566 SMART ultradead3 100 305 IPR014001 -
Psa4g1092 566 SMART helicmild6 341 422 IPR001650 -
Psa4g1092 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Psa4g1092 566 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 48 557 - -
Psa4g1092 566 PANTHER RNA HELICASE 48 557 - -
Psa4g1092 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 461 IPR001650 -
Psa4g1092 566 CDD SF2_C_DEAD 302 432 - -
Psa4g1092 566 MobiDBLite consensus disorder prediction 35 63 - -
Psa4g1092 566 Coils Coil 15 35 - -
Psa4g1092 566 Gene3D - 24 291 IPR027417 -
Psa4g1092 566 Pfam Domain of unknown function (DUF4217) 463 523 IPR025313 -
Psa4g1092 566 MobiDBLite consensus disorder prediction 1 63 - -
Psa4g1092 566 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Psa4g1092 566 Pfam Helicase conserved C-terminal domain 315 421 IPR001650 -
Psa4g1092 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Psa4g1092 566 SMART DUF4217_3 462 525 IPR025313 -
Psa4g1092 566 Coils Coil 47 70 - -
Psa4g1092 566 MobiDBLite consensus disorder prediction 526 566 - -
Psa4g1092 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Psa4g1092 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1092 Psa-Chr4 79740682 79748453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1092 81 440 Eukaryotic Initiation Factors Gene Family AT3G13920 32.418 1.20e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1092 K13179 - gmx:100798885 879.396