Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1087 ATGGGAAGAGGGAGAGTTGAACTAAAGAGGATAGAGAACAAAATTAACAGACAAGTCACTTTTGCAAAGAGAAGAAATGGTGTACTCAAAAAAGCTTATGAGCTTTCAATCCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGCAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGCTACAATGCACTAGAGACCAATCAACCAGTCAATGATGCTCAGAATTACCAGGAATATGTGAGATTAAAAGCAAATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGAGAAGATATTGCACAAATGAATACAAGTGAACTCCAGCAGATTGAGAATCAATTAGAGGCAGCACTTAAGAATATAAGATCTACAAAGACTCAATTCATGCTTGATCAACTAGCTGATCTTCACAACCGGGAAACAGTGCTTGTTGAAACAAATCATGCATTAAGAAGTAAGTTGGAAGAAAATAATGAATCTAGTATCCATCACACACGCTTTCATCCTCAATCAGAGGGATTTTTTCACCCTGTGGGAGTGAATTCCAACTTGCAAATTGGATACAATATGATGGGTTCTTCTTCTGATGTAAACGTTGGAGCTTCATCCTTAAGTATGAATGGATTCTCCACTGGCTGGATGCTTTGA 696 0.3851 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSILCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNALETNQPVNDAQNYQEYVRLKANVEILQRSQRNLLGEDIAQMNTSELQQIENQLEAALKNIRSTKTQFMLDQLADLHNRETVLVETNHALRSKLEENNESSIHHTRFHPQSEGFFHPVGVNSNLQIGYNMMGSSSDVNVGASSLSMNGFSTGWML* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1087 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Psa4g1087 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Psa4g1087 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Psa4g1087 231 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Psa4g1087 231 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1087 231 Coils Coil 116 143 - -
Psa4g1087 231 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g1087 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa4g1087 231 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1087 Psa-Chr4 79599521 79609867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1087 1 231 MADS-box Gene Family AT5G15800 51.527 5.27e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g1087 K-box 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1087 K09264 - gmx:100797819 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4647 3 431155191 431158714 Psa4g1087 4 79599521 79609867 ECH
Psa4g1087 4 79599521 79609867 Psa4g1087 4 79599521 79609867 ECH