Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1085 ATGGAATCTTGGAGTTATATTTCTGAAGAAAAGGGTTATGTTTCCAATGAGAATCAAGGTTCTGAAGAAATGGGTTTTTGTGAAATGTTAGGGAAACAATTTTCAGATGATTTCAATTTCATTGGGAATGTTTCAAGCAAGAAACTTGATGCTAAATTTGGTGACCCAAATGGGTTTTCTTCAAAAGGGGACTCAAATTCCAAGCTTTCAAACGCTGTGGTGGAGACTAATGCTTGGGATTCTCTTATTGATTTGAAGCTGGGACGTTTTGTTGATCATGGTCATGGAGGACCTATTTTGTCTTCTTGTGAATCATCAACACCTCCCAAGAGAGTCAGAGTGCATTCACTCACTGCATACTGTCAAGTTTACGGCTGTAACAAGGATCTTAGTTCTTGTAAGGATTATCACAAAAGGCACAAAGTTTGTGAGGTTCACTCCAAAACTGCTGTAGTCATAGTGAATGGAATTGAGCAAAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGTGTGAATTTGATGATGGTAAGCGCAGCTGCCGCAAACGACTTGCAGGCCATAATGAGCGTCGCAGAAAACCACAAGTAGGCGTTCATTCTGCGAATTCCAGGAGATTGTTTCAGCCATGTGGTGATATAATGTTCCACAGAACCAAGCCACCACAAGCATCTTTTATCTGTCCAGAGGTGTTCTCTAATGGTTTCTCGAGACAGATTAAATCAGAACACGAAACCGGCTTTAGACCTTTATCTTCTGTGCCTGTTACGAATGGACATCATCAACCAAGGTCTTCGTTTGTTTCGTACAACGGCAAACAATTTCCCTTCCTTCATGAAAATGTTGCCACATCCACTACAGGTAGCAGCATGTTTGGTGAAAACAATAACCATTATGCACATGCGGTTGGCAACACCTCGTTGGGAAGGGAAGATTTCAATGCTTTTCATGCCGCATCAACCGTTCGAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACATCAAGCCATTCGTCGGGAATTCCCTTTGATCACCCTTCGGTTATCCCAAGCAGTCATAGCCCTCTTTATAGCATAAGATCACAAACGACGTCCTCAAGCCGAGTGTCTGATGGATTTTTATCAGAATTAAGTCCTGCAGATGGAGGTCATCTCAGCCCTTTATTGATACCAGACAATAATGATATTGTGAACTTTGAAATGGCAGATGGAATCTTTCAAGATTCAGATTTCGTGAATGCTAAAGACCGTCTTTCGTGTGAAGATGATGCAACCATCGACTTACTACAACTGTCGTCGCAGCTTCAGCGAGTCGAGCATCATAGACAATCTTTGCAGGTGAAGAACGAGAGTGATTCTTCTTGCACTCTCCGAATTACTTAA 1413 0.4176 MESWSYISEEKGYVSNENQGSEEMGFCEMLGKQFSDDFNFIGNVSSKKLDAKFGDPNGFSSKGDSNSKLSNAVVETNAWDSLIDLKLGRFVDHGHGGPILSSCESSTPPKRVRVHSLTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLCEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSRRLFQPCGDIMFHRTKPPQASFICPEVFSNGFSRQIKSEHETGFRPLSSVPVTNGHHQPRSSFVSYNGKQFPFLHENVATSTTGSSMFGENNNHYAHAVGNTSLGREDFNAFHAASTVRGLSGISDSCALSLLSSQSKNTSSHSSGIPFDHPSVIPSSHSPLYSIRSQTTSSSRVSDGFLSELSPADGGHLSPLLIPDNNDIVNFEMADGIFQDSDFVNAKDRLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKNESDSSCTLRIT* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1085 470 Gene3D - 117 182 IPR036893 GO:0003677|GO:0005634
Psa4g1085 470 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Psa4g1085 470 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 470 IPR044817 GO:0003677
Psa4g1085 470 Pfam SBP domain 121 194 IPR004333 GO:0003677
Psa4g1085 470 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Psa4g1085 470 PANTHER 1 PROTEIN, PUTATIVE-RELATED 15 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1085 Psa-Chr4 79438843 79442759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1085 83 321 SBP-box Gene Family AT1G69170 42.248 9.28e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa4g1085 SBP 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1085 - - gmx:100817547 570.466