Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1084 ATGTACGGGTTACGAGCAGAAAGAGCACCTCTTTTGGAGGCTGAGCGCGGTGGAAGGAGAAAGAAACTCGATGATTCCACGTCAGAACAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGTAATCATCAAACCTCTATTGCATTATTACTTATTAGCAAAGCCTGAGGCTGGAAAGTTGCTCATTGCTACCATAGCACTGTTTATTGCAGCTACATCAAGTACCTTAGTTCAAAATTTTGGTGGGAAGATAATTGATATTGTCTCGGGGGATATCAGAACTCCTGAGGAGAAAGATGCAGCCTTAGATGCTGTCAAGAACACCATACTAGAAATCCTTCTAATTGTTGTCATCGGTTCTGTTTGCTCCGCTCTTCGAGCCTGGATTTTTTATTCTTCCAGCGAAAGGGTTGTCGCACGCTTGAGGAAGAATCTATTCAGTCACCTTGTAAACCAGGAAATAGCCTTCTTTGATGTTACACGGATCGGTGAACTTTTAAGCAGGCTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAATCTCTCAGAGGCCTTGAGAAACTTGTCAACTGCATTTATTGGTCTAGGTTTCATGCTTGCAACATCATGGAAGTTAACATTGCTGTCTTTGGCTGTTGTACCTGTTATTTCGGCTGGTGTTCGTAGATTTGGTCGTTTCCTGCGCGAACTTTCTAATAAAACTCAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCTTTTGGTGCAATAAGAACGGTTAGATCTTTTGCTCAGGAAGATTATGAAGTAGAACGTTACTCCGAGAAAGTTAATGAGAGCCTGAAGCTCGGACTTAAACAAGCTAAAGCTATTGGACTCTTTTCTGGAGGTATTAATGCAGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACAATCAAGGGTGCCATGTCTTCGGGCGATCTCACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGTTTGTCGGGATTGTATACCGTCGTTATGAAAGCTGCTGGTGCTAGCAGAAGGGTATTTCAACTGTTGGATCGTGCCTCGTCCATGCCTATGTCCGGAGATAAATGTCCTCTGGGTGATCATGACGGAGAAGTGGAACTAGATGATATATGGTTTTCCTATCCGTCGCGCCCTAATCAAATGGTGATCAAGGGTATTACAATGAAACTGCAACCTGGCTCAAAGGTTGCGCTTGTTGGTCCAAGCGGCGGTGGAAAGACTACAATTGCAAACTTGATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGGTGAATGGTGTTCCTCTGGTAGAAATATCACACAGACATTTACACAAAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAATTGTTCCATAGAGGAAAACATAGCTTATGGATTTGACGGAAAAATCGAAGACGCTGATATTGAAAATGCAGCTAAAATGGCCAACGCGCATGAATTTATATCGAAATTCCCCGAAAAATACAAGACCTTTGTTGGAGAGCGAGGAATAAGGCTTTCAGGAGGACAGAAACAAAGAATAGCAATTGCTAGAGCCTTGCTTATGGATCCAAAAATTCTCTTACTGGATGAAGCCACCAGTGCCTTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCTATGGATTTGATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTTGAGCGCGGTACTCACGACGAGCTTCTCGACAAGAATGGTGTTTATACTGCATTAGTCAGGAGACAACTACAGACAACAAAAACCGAAATCTAA 1899 0.4202 MYGLRAERAPLLEAERGGRRKKLDDSTSEQVSDLEHGDAVPVIIKPLLHYYLLAKPEAGKLLIATIALFIAATSSTLVQNFGGKIIDIVSGDIRTPEEKDAALDAVKNTILEILLIVVIGSVCSALRAWIFYSSSERVVARLRKNLFSHLVNQEIAFFDVTRIGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMLATSWKLTLLSLAVVPVISAGVRRFGRFLRELSNKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEVERYSEKVNESLKLGLKQAKAIGLFSGGINAASTLSVIIVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRASSMPMSGDKCPLGDHDGEVELDDIWFSYPSRPNQMVIKGITMKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHRHLHKKISIVSQEPTLFNCSIEENIAYGFDGKIEDADIENAAKMANAHEFISKFPEKYKTFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDLIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVERGTHDELLDKNGVYTALVRRQLQTTKTEI* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1084 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 623 IPR003439 GO:0005524
Psa4g1084 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 62 352 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g1084 632 Gene3D - 384 629 IPR027417 -
Psa4g1084 632 SMART AAA_5 413 606 IPR003593 -
Psa4g1084 632 Gene3D ABC transporter type 1, transmembrane domain 113 383 IPR036640 GO:0005524|GO:0016021
Psa4g1084 632 CDD ABC_MTABC3_MDL1_MDL2 386 624 - -
Psa4g1084 632 Pfam ABC transporter transmembrane region 61 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g1084 632 Pfam ABC transporter 405 554 IPR003439 GO:0005524
Psa4g1084 632 CDD ABC_6TM_AtABCB27_like 64 360 - -
Psa4g1084 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 624 IPR027417 -
Psa4g1084 632 ProSitePatterns ABC transporters family signature. 526 540 IPR017871 GO:0005524
Psa4g1084 632 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 4 628 - -
Psa4g1084 632 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 628 IPR039421 -
Psa4g1084 632 SUPERFAMILY ABC transporter transmembrane region 47 366 IPR036640 GO:0005524|GO:0016021
Psa4g1084 632 PIRSF ABC_prm/ATPase_B 14 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1084 Psa-Chr4 79435638 79442857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1084 136 632 Calmodulin-binding Proteins AT2G36910 37.992 3.19e-93 311